Gene detail

Detail information of GWHGAAZE030986

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008228413.1	4.01797E-95	PREDICTED: poly(A) polymerase type 3-like isoform X1 [Prunus mume]
COG	YP_007058509.1	0.000000002	poly(A) polymerase
Swissprot	tr\|Q0WLA9\|PAPS4_ARATH	2E-87	Nuclear poly(A) polymerase 4 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|M5WV02\|M5WV02_PRUPE	3E-94	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17642.1} (Fragment)
TAIR10	AT4G32850.8	1E-74	nuclear poly(a) polymerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51392287	51394810	-
GWHAAZE00000009	mRNA	51392287	51394810	-
GWHAAZE00000009	exon	51392287	51392304	-
GWHAAZE00000009	exon	51392378	51392539	-
GWHAAZE00000009	exon	51392620	51392682	-
GWHAAZE00000009	exon	51393097	51393204	-
GWHAAZE00000009	exon	51394493	51394570	-
GWHAAZE00000009	exon	51394682	51394810	-
GWHAAZE00000009	CDS	51394682	51394810	-
GWHAAZE00000009	CDS	51394493	51394570	-
GWHAAZE00000009	CDS	51393097	51393204	-
GWHAAZE00000009	CDS	51392620	51392682	-
GWHAAZE00000009	CDS	51392378	51392539	-
GWHAAZE00000009	CDS	51392287	51392304	-

Transcript Sequence
>GWHTAAZE031020 ATGGCGGGTTTGAGTGGGTCGGGTCCGCCTCAGCAAGCCTTAACGCCGAAGCATCATGGGGTGACCAAACCCTTATCTCTTGCAGGGCCTACTGAAGCCGATTTACTAAAAAGCAAGGACTTGGAGAAGTTTTTGGTAGATTCTGGATTACATGAAAGCGAGGAAGATTCTGCCAAGAGAGAGGTGGTTCTTCTTCGTATTAAGCAGATTGTGATAGATTGGGTGAAAAATCTTACTCGCCTTAGAGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGTCATATTTACATTTGGTTCTTATCGGCTAGGGGTACATGGTCCTGGAGCTGACATTGATACCTTATGTGTTGGGCCATCTTATGTCAATCGGGAGGAAGATTTCTTTTTTAGACTGCATAACATCTTGGCAGAGATGGAAGAAGTTAGTGAGTTGCAACCAGTTCCTGATGCTCATGTTCCTGTTATGAAATTCAAGTTTGATGGAATTTCAATTGATCTTCTTTATGCAAGTATATCACTTTTGGTCGTCCCAGATGGGGTTCATGTGAATTGA

Network for GWHGAAZE030986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04928.18	PAP_central	20	139	9.90E-12
PF01909.24	NTP_transf_2	90	169	3.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14376	PAP	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0043631	biological_process	RNA polyadenylation
GO:0004652	molecular_function	polynucleotide adenylyltransferase activity
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.486
	SRR3591706	second leaf	32.588
	SRR3591707	mature leaf	32.073
	SRR3591708	Shoot apex	30.135
	SRR3591709	Stem	46.118
	SRR3591710	White floral bud	42.445
	SRR3591711	White flower	46.171
	SRR3591712	Green floral bud	23.043
	SRR3591713	Yellow flower	40.332
SRP173429	SRR8316895	Juvenile bud stage	23.655
	SRR8316896	Juvenile bud stage	30.489
	SRR8316897	Juvenile bud stage	14.327
	SRR8316894	Third green stage	15.035
	SRR8316900	Third green stage	32.737
	SRR8316901	Third green stage	28.697
	SRR8316898	Complete white stage	14.763
	SRR8316899	Complete white stage	43.872
	SRR8316903	Complete white stage	33.722
	SRR8316902	Silver flowering stage	18.682
	SRR8316904	Silver flowering stage	39.067
	SRR8316905	Silver flowering stage	16.672
	SRR8316906	Gold flowering stage	52.111
	SRR8316907	Gold flowering stage	51.050
	SRR8316908	Gold flowering stage	51.545
SRP132670	SRR6706286	Control	18.656
	SRR6706287	Light intensity 50%	20.916
	SRR6706288	Light intensity 20%	22.425
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.328
	CNS0095593	Slightly white alabastrum(diploid) 2	13.481
	CNS0095594	Slightly white alabastrum(diploid) 3	7.765
	CNS0095595	Whole white alabastrum(diploid) 2	12.448
	CNS0095596	Whole white alabastrum(diploid) 3	8.447
	CNS0095597	Whole white alabastrum(diploid) 4	12.360
	CNS0095598	Silvery flower (diploied) 1	27.631
	CNS0095599	Silvery flower (diploied) 2	21.803
	CNS0095600	Silvery flower (diploied) 3	46.377
	CNS0095601	Golden flower (diploid) 1	15.247
	CNS0095602	Golden flower (diploid) 2	47.274
	CNS0095603	Golden flower (diploid) 3	46.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.712
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.914
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.561
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.544
	CNS0095610	Silvery flower (tetraploid) 1	69.274
	CNS0095611	Silvery flower (tetraploid) 2	57.085
	CNS0095612	Silvery flower (tetraploid) 3	47.830
	CNS0095613	Golden flower (tetraploid) 1	29.009
	CNS0095614	Golden flower (tetraploid) 2	43.886
	CNS0095615	Golden flower (tetraploid) 3	68.799
CRA001975	CRR073297	Stem 1	15.770
	CRR073298	Stem 2	17.761
	CRR073299	Stem 3	14.605
	CRR073300	Leaf 1	19.335
	CRR073301	Leaf 2	13.587
	CRR073302	Leaf 3	6.636
	CRR073303	Juvenile bud 1	8.846
	CRR073304	Juvenile bud 2	8.838
	CRR073305	Juvenile bud 3	13.238
	CRR073306	Third green 1	7.100
	CRR073307	Third green 2	4.580
	CRR073308	Third green 3	9.229
	CRR073309	Second white 1	6.723
	CRR073310	Second white 2	13.704
	CRR073311	Second white 3	14.515
	CRR073312	Silver flowering 1	17.995
	CRR073313	Silver flowering 2	18.322
	CRR073314	Silver flowering 3	13.656
	CRR073315	Gold flowering 1	6.166
	CRR073316	Gold flowering 2	8.029
	CRR073317	Gold flowering 3	5.713
	CRR073318	Tawny withering 1	8.500
	CRR073319	Tawny withering 2	6.874
	CRR073320	Tawny withering 3	9.507