Gene detail

Detail information of GWHGAAZE030984

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002515957.1	0	nucleic acid binding protein, putative [Ricinus communis]
COG	YP_005369064.1	4E-19	polynucleotide Adenyltransferase
Swissprot	tr\|Q0WLA9\|PAPS4_ARATH	0	Nuclear poly(A) polymerase 4 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|B9RQD8\|B9RQD8_RICCO	0	Nucleic acid binding protein, putative {ECO:0000313\|EMBL:EEF46377.1}
TAIR10	AT4G32850.9	2E-142	nuclear poly(a) polymerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51386492	51389266	-
GWHAAZE00000009	mRNA	51386492	51389266	-
GWHAAZE00000009	exon	51389264	51389266	-
GWHAAZE00000009	exon	51388789	51388902	-
GWHAAZE00000009	exon	51388159	51388488	-
GWHAAZE00000009	exon	51387899	51388063	-
GWHAAZE00000009	exon	51386887	51387744	-
GWHAAZE00000009	exon	51386492	51386694	-
GWHAAZE00000009	CDS	51389264	51389266	-
GWHAAZE00000009	CDS	51388789	51388902	-
GWHAAZE00000009	CDS	51388159	51388488	-
GWHAAZE00000009	CDS	51387899	51388063	-
GWHAAZE00000009	CDS	51386887	51387744	-
GWHAAZE00000009	CDS	51386608	51386694	-
GWHAAZE00000009	three_prime_UTR	51386492	51386607	-

Transcript Sequence
>GWHTAAZE031018 ATGGACTTGGACATCTCCGATGTATCTGTTTTGTACAATGTTGATGAGCCAACTGTTCGGAGTCTTAATGGTTGTAGGGTTGCGGATCAAATTCTCAAGCTTGTTCCAAATGCTGAGGTGACTGGATTTCTTGGTGGTGTGAACTGGGCTCTCCTTGTAGCTCGGGTCTGTCAGTTTTATCCCAATGCTGTTCCCAGTATGTTGGTTTCTCGATTTTTCAGGGTCTACACGCAGTGGCGCTGGCCAAATCCTGTGATGCTTTGTGCAATAGAGGAGGATGAACTTGGATTCTCCGTGTGGGACCCCCGTAGAAATCCTCGAGACCGAACACATCTTATGCCAATTATAACACCTGCCTATCCATGCATGAATTCTAGCTATAACGTCTCAACCAGTACTCTCCGTGTTATGACAGAGCAGTTCCAATTTGGTAACAAAATTTGCGAGGAGATAGAGCTGAATAAATCGCAGTGGAATGCGTTGTTTGAACCGTATTCATTTTTCGAAAGTTATAAGAACTATCTCCAGGTTGACATAATCGCAGCTGATGCTGATGACTTGCGTGCTTGGAAAGGTTGGGTCGAGTCCCGGCTAAGGCAACTCACTCTGATGATAGAACGGGATACGTTTGGCAAGTTGCAGTGCCGCCCTTATCCTCATGATTACATCGATCCTTCAAGGCAGTGTTCGCACTCTGCCTTTTTCATGGGTTTGCAGAGGAAACAAGGAGAGAGAGTGGAAGAAGGCCAGCAGTTTGATATTCGAGGAACGGTGGATGAGTTTAGACAGTCGGTGAACATGTACATGTTTTGGAAACCGGGGATGGAGATCTATGTTTCTCATGTCCGTAGAAAGCAGATTCCTTCTTATGTGTTTCCGGATGGATATAAACGAAGTCGACCACCAAGGCTCATGAGCCACGAGCAGCAGCAGCATGCTTCAAAATCTTTCGATGATGAAGTTTGCAGGTCTGGATCTGGTGAAAGACGTATCAGAAGGAAAAGAGAGATAGAGAGTGCGGATGCGAAGCAAGAGAGTCCTGAGAAAAGGCAATCGATTAGCCCCCAGACACGGGTTTCAGTTTCTCCTGAAATTGGTAGTAGTATATTTTGTGGTATGTCGAAAGATTGTTTGGCAACGCAAGGGAGTGTTGAAGTAAATGGAGAGTGCCAAGATGAAAAACCAGTGAATGTACTGTTGGCTGAAACAACAATTGAAGAGGTTGCGAGCATATCTAATTCAAGTGTTGTTACTAACCTTGCAAGTGAGGTGGATTCATATGAGGACGGTGGACCTGAATCATTGACAGGTAGCTGTGAAGGGAATCCAGGTAGCATTGCTGGGAGTAACAATCTTGTTGGGTCGTCACAGGGTGATTCGTGTGAGGCTGATTCCCAGTCCCTTCTGGATAATAATGGGTTTCAAAATGACAGCGAGGTCTTCAAGGATGGTTTGCAGCAAGAGTTAGAGCCAAATGCTGGACTTGGGATGGATGGCAGTGAAGTCTACAGGAGTCGTCAACCCTGTGCAGAAGACCGTGATAAGGCATGTGCATAAATTTCTATCTCATATGTTGCTTTTTTTTCCATTCCATTTGTCTTTATAATGCTCTTCTTGGGATTTTTTTTTTTGGTTGTGTGTTTCCTTTACAGGTTAAGCCTGACGTCAACGGC

Network for GWHGAAZE030984

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04928.18	PAP_central	2	39	3.40E-10
PF04928.18	PAP_central	39	164	4.80E-58
PF04926.16	PAP_RNA-bind	166	224	5.90E-10
PF04926.16	PAP_RNA-bind	228	299	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14376	PAP	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0043631	biological_process	RNA polyadenylation
GO:0031123	biological_process	RNA 3'-end processing
GO:0003723	molecular_function	RNA binding
GO:0016779	molecular_function	nucleotidyltransferase activity
GO:0004652	molecular_function	polynucleotide adenylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.483
	SRR3591706	second leaf	43.244
	SRR3591707	mature leaf	44.134
	SRR3591708	Shoot apex	52.663
	SRR3591709	Stem	64.507
	SRR3591710	White floral bud	62.811
	SRR3591711	White flower	60.961
	SRR3591712	Green floral bud	42.575
	SRR3591713	Yellow flower	60.262
SRP173429	SRR8316895	Juvenile bud stage	34.494
	SRR8316896	Juvenile bud stage	47.438
	SRR8316897	Juvenile bud stage	21.518
	SRR8316894	Third green stage	21.551
	SRR8316900	Third green stage	43.351
	SRR8316901	Third green stage	48.061
	SRR8316898	Complete white stage	19.852
	SRR8316899	Complete white stage	60.957
	SRR8316903	Complete white stage	50.206
	SRR8316902	Silver flowering stage	29.331
	SRR8316904	Silver flowering stage	46.613
	SRR8316905	Silver flowering stage	20.417
	SRR8316906	Gold flowering stage	62.232
	SRR8316907	Gold flowering stage	65.835
	SRR8316908	Gold flowering stage	69.688
SRP132670	SRR6706286	Control	48.594
	SRR6706287	Light intensity 50%	51.320
	SRR6706288	Light intensity 20%	52.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.745
	CNS0095593	Slightly white alabastrum(diploid) 2	29.707
	CNS0095594	Slightly white alabastrum(diploid) 3	31.297
	CNS0095595	Whole white alabastrum(diploid) 2	30.505
	CNS0095596	Whole white alabastrum(diploid) 3	21.991
	CNS0095597	Whole white alabastrum(diploid) 4	28.530
	CNS0095598	Silvery flower (diploied) 1	59.206
	CNS0095599	Silvery flower (diploied) 2	41.514
	CNS0095600	Silvery flower (diploied) 3	57.952
	CNS0095601	Golden flower (diploid) 1	45.547
	CNS0095602	Golden flower (diploid) 2	64.070
	CNS0095603	Golden flower (diploid) 3	61.792
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.078
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.229
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.470
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.551
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.442
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.044
	CNS0095610	Silvery flower (tetraploid) 1	79.036
	CNS0095611	Silvery flower (tetraploid) 2	65.377
	CNS0095612	Silvery flower (tetraploid) 3	71.593
	CNS0095613	Golden flower (tetraploid) 1	52.109
	CNS0095614	Golden flower (tetraploid) 2	66.631
	CNS0095615	Golden flower (tetraploid) 3	77.769
CRA001975	CRR073297	Stem 1	82.204
	CRR073298	Stem 2	71.286
	CRR073299	Stem 3	54.404
	CRR073300	Leaf 1	85.025
	CRR073301	Leaf 2	77.595
	CRR073302	Leaf 3	41.268
	CRR073303	Juvenile bud 1	50.868
	CRR073304	Juvenile bud 2	31.124
	CRR073305	Juvenile bud 3	63.617
	CRR073306	Third green 1	34.485
	CRR073307	Third green 2	25.259
	CRR073308	Third green 3	34.821
	CRR073309	Second white 1	33.282
	CRR073310	Second white 2	41.788
	CRR073311	Second white 3	49.190
	CRR073312	Silver flowering 1	58.760
	CRR073313	Silver flowering 2	47.596
	CRR073314	Silver flowering 3	54.571
	CRR073315	Gold flowering 1	22.518
	CRR073316	Gold flowering 2	30.430
	CRR073317	Gold flowering 3	21.846
	CRR073318	Tawny withering 1	50.604
	CRR073319	Tawny withering 2	45.827
	CRR073320	Tawny withering 3	40.217