Gene detail

Detail information of GWHGAAZE030980

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283628.2	0	PREDICTED: lysM domain receptor-like kinase 3 isoform X1 [Vitis vinifera]
COG	YP_004571825.1	1E-24	serine/threonine protein kinase
Swissprot	tr\|F4IB81\|LYK3_ARATH	0	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|F6HY96\|F6HY96_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59419.1}
TAIR10	AT1G51940.1	0	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51321390	51325653	-
GWHAAZE00000009	mRNA	51321390	51325653	-
GWHAAZE00000009	exon	51321390	51321554	-
GWHAAZE00000009	exon	51321657	51321764	-
GWHAAZE00000009	exon	51321853	51322000	-
GWHAAZE00000009	exon	51322088	51322185	-
GWHAAZE00000009	exon	51322276	51322427	-
GWHAAZE00000009	exon	51322580	51322685	-
GWHAAZE00000009	exon	51322801	51322890	-
GWHAAZE00000009	exon	51322989	51323134	-
GWHAAZE00000009	exon	51323546	51323845	-
GWHAAZE00000009	exon	51324165	51324242	-
GWHAAZE00000009	exon	51325230	51325653	-
GWHAAZE00000009	CDS	51325230	51325653	-
GWHAAZE00000009	CDS	51324165	51324242	-
GWHAAZE00000009	CDS	51323546	51323845	-
GWHAAZE00000009	CDS	51322989	51323134	-
GWHAAZE00000009	CDS	51322801	51322890	-
GWHAAZE00000009	CDS	51322580	51322685	-
GWHAAZE00000009	CDS	51322276	51322427	-
GWHAAZE00000009	CDS	51322088	51322185	-
GWHAAZE00000009	CDS	51321853	51322000	-
GWHAAZE00000009	CDS	51321657	51321764	-
GWHAAZE00000009	CDS	51321390	51321554	-

Transcript Sequence
>GWHTAAZE031014 ATGTTCGATGTTTTACCCCAAGACCTGACCGTCGAAGGCAACGGCCGAGATTACATCTTTATCCGTAAGAATTGTTCTTGTGCTTCGACTATAAAGAAGTACTTGTCCAATACGACGTATACCGTGAGAGAAAATGGTGGTTTTGTGTATGATAAGGTGATTGAAGCCTATGGAGGATTGGCTTTTTTGCCTAATTCGAGGAGAAGGGCCACAGCTGGGGGTGTGGTGTGGTTGCAGTTGTTTTGTGGCTGTTCCAGTGGGCTGTGGAATTACATGATGAGTTATGTGATGAGAGATGGGGATAGTATAGAGTCGTTGGCCAGTAGGTTTGGGGTTAGTATGGATAGTATTGAGACTGCTAATGGGATTACTAATCCTGATAATGTTACTATTGGTGCACTTTATTATATACCATTGAATTCAGTTCCCGGGGAGCCTTATCCAATTGAGAATGACCTTCCTCCATCTCCAGTTCCGGCACCATCTGTTACTAGTATTTCAGTAAATCAGGTCAATCATAAAGCTCATGCGCCCTATCTGTGGATCTTAGGGAGCTTAGGAGTTTGTCTGGTTCTGATAGTGTTAGTTGTAATTATTTTTGTTTGCTTGAGGTCATCGAGCTGCTTTACTGAATCCCGAGGAAGAAGCAAAAATGATCCTGACGAGAGCATTTCTCACAAGTTTCATATTCTTCAAACAACTAATTTTTGTTGTGCTTCGGGGAGAAACATCTTCTGCAAATCTAAGGACGCAAAACAAACAAATGGGGAATCTAGTGATCGAAAGATGAACATTCCTAAAGTTATTGGGGCTGATGTCTTTGACATGGAGAAACCTCTGGTTTTCTCATATGAAGAAATTCTATCATCTACTGATTCTTTCTCTGATTCAAATCTAATTGGGCATGGAACATATGGATCTGTCTATTATGGCCTCCTTCGTGACCAGGAAGTTGCAATCAAAAGAATGACTGCGACAAAAACGAAAGAATTCATGGCAGAGATGAAAGTTTTGTGCAAGGTTCATCACACAAATTTGGTAGAATTGATTGGCTATGCAGCTAGTGATGATGAACTTTTCCTCATTTACGAATATGCCCAAAAGGGTTCACTTAGAAGTCACTTACACGATCCTCAGAACAAGGGTCATACGCCACTTTCATGGATCATGAGGGTCCAAATTGCACTTGATGCAGCTAGAGGTCTGGAATACATACATGAGCACACTAAGCCCCATTATGTGCATAGGGATGTAAAGACGAGCAACATCTTGCTCGATGGCGCCTTCAGAGGGAAGATTTCAGATTTTGGGTTGGCAAAACTTGTTGGAAAAACTGGTGATGCAGAAGCTTCAGTGACAAGAGTTGTTGGTACTTTTGGTTATCTTGCACCTGAATACTTGAGGGATGGTCTGGCCACAAACAAGAGTGATGTTTATGCATTTGGCGTTGTACTTTTCGAGGTGATATCAGGAAAGGAGGCCATTACACGAACTGAAGGAGCTACCTCAAAAAATTCTGAAAGGCGATCATTGGCATCCATTATGCTGGCAACTCTTAGGAATTCTGCAGACTCCATGAGTATGTCAAGCTTGAAAGATCACATTGATCCTAATCTGATGGATTTGTATCCCCATGACTGTCTTTTCAAGACAGCTATGCTGGCAAAGCAATGTGTGGACGATGATCCAATATTGAGGCCAGACACCAAGCAAATTGTAATATCCCTCTCACAGATACTCTTATCCTCAGTGGAGTGGGAAGCAACTCTTGCCGGTAATAGCCAAGTTTTCAGTGGCCTTGTTCAAGGGAGATAA

Network for GWHGAAZE030980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01476.21	LysM	95	132	4.20E-05
PF07714.18	PK_Tyr_Ser-Thr	298	574	7.50E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.209
	SRR3591706	second leaf	24.192
	SRR3591707	mature leaf	23.918
	SRR3591708	Shoot apex	20.742
	SRR3591709	Stem	29.243
	SRR3591710	White floral bud	53.545
	SRR3591711	White flower	32.311
	SRR3591712	Green floral bud	32.506
	SRR3591713	Yellow flower	14.603
SRP173429	SRR8316895	Juvenile bud stage	35.104
	SRR8316896	Juvenile bud stage	39.617
	SRR8316897	Juvenile bud stage	22.376
	SRR8316894	Third green stage	15.218
	SRR8316900	Third green stage	43.116
	SRR8316901	Third green stage	47.089
	SRR8316898	Complete white stage	29.535
	SRR8316899	Complete white stage	70.529
	SRR8316903	Complete white stage	49.123
	SRR8316902	Silver flowering stage	15.740
	SRR8316904	Silver flowering stage	26.615
	SRR8316905	Silver flowering stage	12.310
	SRR8316906	Gold flowering stage	22.875
	SRR8316907	Gold flowering stage	21.807
	SRR8316908	Gold flowering stage	26.669
SRP132670	SRR6706286	Control	22.630
	SRR6706287	Light intensity 50%	31.782
	SRR6706288	Light intensity 20%	32.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.597
	CNS0095593	Slightly white alabastrum(diploid) 2	38.987
	CNS0095594	Slightly white alabastrum(diploid) 3	28.093
	CNS0095595	Whole white alabastrum(diploid) 2	28.322
	CNS0095596	Whole white alabastrum(diploid) 3	22.320
	CNS0095597	Whole white alabastrum(diploid) 4	22.800
	CNS0095598	Silvery flower (diploied) 1	46.129
	CNS0095599	Silvery flower (diploied) 2	42.716
	CNS0095600	Silvery flower (diploied) 3	41.739
	CNS0095601	Golden flower (diploid) 1	40.538
	CNS0095602	Golden flower (diploid) 2	43.788
	CNS0095603	Golden flower (diploid) 3	40.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.242
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.850
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.752
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.628
	CNS0095610	Silvery flower (tetraploid) 1	32.186
	CNS0095611	Silvery flower (tetraploid) 2	31.855
	CNS0095612	Silvery flower (tetraploid) 3	28.922
	CNS0095613	Golden flower (tetraploid) 1	11.597
	CNS0095614	Golden flower (tetraploid) 2	22.554
	CNS0095615	Golden flower (tetraploid) 3	18.551
CRA001975	CRR073297	Stem 1	30.499
	CRR073298	Stem 2	29.073
	CRR073299	Stem 3	29.986
	CRR073300	Leaf 1	33.498
	CRR073301	Leaf 2	31.039
	CRR073302	Leaf 3	29.404
	CRR073303	Juvenile bud 1	40.817
	CRR073304	Juvenile bud 2	48.840
	CRR073305	Juvenile bud 3	67.320
	CRR073306	Third green 1	45.509
	CRR073307	Third green 2	52.268
	CRR073308	Third green 3	41.671
	CRR073309	Second white 1	12.113
	CRR073310	Second white 2	7.343
	CRR073311	Second white 3	6.752
	CRR073312	Silver flowering 1	4.398
	CRR073313	Silver flowering 2	2.866
	CRR073314	Silver flowering 3	2.910
	CRR073315	Gold flowering 1	19.578
	CRR073316	Gold flowering 2	27.231
	CRR073317	Gold flowering 3	18.381
	CRR073318	Tawny withering 1	27.841
	CRR073319	Tawny withering 2	27.229
	CRR073320	Tawny withering 3	33.240