Detail information of GWHGAAZE030945


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98051.11.13852E-34unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TP67|A0A068TP67_COFCA4E-35Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98051.1}
TAIR10AT4G32350.12E-14Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5080580750806715-
GWHAAZE00000009mRNA5080580750806715-
GWHAAZE00000009exon5080580750806715-
GWHAAZE00000009CDS5080580750806715-
Transcript Sequence

Network for GWHGAAZE030945

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.256
SRR3591706second leaf3.207
SRR3591707mature leaf0.000
SRR3591708Shoot apex5.097
SRR3591709Stem12.640
SRR3591710White floral bud71.116
SRR3591711White flower27.482
SRR3591712Green floral bud10.271
SRR3591713Yellow flower27.480
SRP173429 SRR8316895Juvenile bud stage 15.582
SRR8316896Juvenile bud stage 13.105
SRR8316897Juvenile bud stage 8.986
SRR8316894Third green stage 5.608
SRR8316900Third green stage 17.046
SRR8316901Third green stage 26.686
SRR8316898Complete white stage 36.386
SRR8316899Complete white stage 36.938
SRR8316903Complete white stage 67.643
SRR8316902Silver flowering stage35.576
SRR8316904Silver flowering stage30.470
SRR8316905Silver flowering stage13.421
SRR8316906Gold flowering stage 34.681
SRR8316907Gold flowering stage 44.976
SRR8316908Gold flowering stage 31.581
SRP132670SRR6706286Control12.018
SRR6706287Light intensity 50%22.600
SRR6706288Light intensity 20%21.877
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.111
CNS0095593Slightly white alabastrum(diploid) 221.911
CNS0095594Slightly white alabastrum(diploid) 318.920
CNS0095595Whole white alabastrum(diploid) 219.467
CNS0095596Whole white alabastrum(diploid) 318.818
CNS0095597Whole white alabastrum(diploid) 421.261
CNS0095598Silvery flower (diploied) 123.218
CNS0095599Silvery flower (diploied) 225.444
CNS0095600Silvery flower (diploied) 358.192
CNS0095601Golden flower (diploid) 121.873
CNS0095602Golden flower (diploid) 248.407
CNS0095603Golden flower (diploid) 348.634
CNS0095604Slightly white alabastrum(tetraploid) 17.169
CNS0095605Slightly white alabastrum(tetraploid) 24.788
CNS0095606Slightly white alabastrum(tetraploid) 36.756
CNS0095607Whole white alabastrum(tetraploid) 15.194
CNS0095608Whole white alabastrum(tetraploid) 29.815
CNS0095609Whole white alabastrum(tetraploid) 311.199
CNS0095610Silvery flower (tetraploid) 113.515
CNS0095611Silvery flower (tetraploid) 210.926
CNS0095612Silvery flower (tetraploid) 3104.966
CNS0095613Golden flower (tetraploid) 113.647
CNS0095614Golden flower (tetraploid) 28.438
CNS0095615Golden flower (tetraploid) 335.385
CRA001975CRR073297Stem 19.447
CRR073298Stem 29.731
CRR073299Stem 36.346
CRR073300Leaf 117.289
CRR073301Leaf 217.783
CRR073302Leaf 311.829
CRR073303Juvenile bud 113.865
CRR073304Juvenile bud 224.283
CRR073305Juvenile bud 331.368
CRR073306Third green 150.904
CRR073307Third green 272.803
CRR073308Third green 365.553
CRR073309Second white 117.810
CRR073310Second white 224.839
CRR073311Second white 322.842
CRR073312Silver flowering 119.115
CRR073313Silver flowering 27.623
CRR073314Silver flowering 39.011
CRR073315Gold flowering 12.354
CRR073316Gold flowering 24.110
CRR073317Gold flowering 31.864
CRR073318Tawny withering 128.534
CRR073319Tawny withering 222.802
CRR073320Tawny withering 337.373