Gene detail

Detail information of GWHGAAZE030938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98070.1	0	unnamed protein product [Coffea canephora]
COG	YP_003890644.1	5E-36	WD40 repeat-containing protein
Swissprot	tr\|Q9C827\|COB22_ARATH	0	Coatomer subunit beta'-2
trEMBL	tr\|A0A068TP13\|A0A068TP13_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98070.1}
TAIR10	AT1G52360.1	0	Coatomer, beta' subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50696980	50710066	-
GWHAAZE00000009	mRNA	50696980	50710066	-
GWHAAZE00000009	exon	50696980	50697159	-
GWHAAZE00000009	exon	50699044	50699218	-
GWHAAZE00000009	exon	50699564	50699670	-
GWHAAZE00000009	exon	50700988	50701081	-
GWHAAZE00000009	exon	50701165	50701361	-
GWHAAZE00000009	exon	50701916	50701987	-
GWHAAZE00000009	exon	50702189	50702303	-
GWHAAZE00000009	exon	50702623	50702739	-
GWHAAZE00000009	exon	50702830	50702921	-
GWHAAZE00000009	exon	50703027	50703203	-
GWHAAZE00000009	exon	50703334	50703408	-
GWHAAZE00000009	exon	50703507	50703647	-
GWHAAZE00000009	exon	50703982	50704170	-
GWHAAZE00000009	exon	50705098	50705314	-
GWHAAZE00000009	exon	50705704	50705772	-
GWHAAZE00000009	exon	50706317	50706465	-
GWHAAZE00000009	exon	50706542	50706673	-
GWHAAZE00000009	exon	50706762	50707087	-
GWHAAZE00000009	exon	50707208	50707244	-
GWHAAZE00000009	exon	50708952	50709006	-
GWHAAZE00000009	exon	50709193	50709254	-
GWHAAZE00000009	exon	50709371	50709391	-
GWHAAZE00000009	exon	50709682	50710066	-
GWHAAZE00000009	five_prime_UTR	50709832	50710066	-
GWHAAZE00000009	CDS	50709682	50709831	-
GWHAAZE00000009	CDS	50709371	50709391	-
GWHAAZE00000009	CDS	50709193	50709254	-
GWHAAZE00000009	CDS	50708952	50709006	-
GWHAAZE00000009	CDS	50707208	50707244	-
GWHAAZE00000009	CDS	50706762	50707087	-
GWHAAZE00000009	CDS	50706542	50706673	-
GWHAAZE00000009	CDS	50706317	50706465	-
GWHAAZE00000009	CDS	50705704	50705772	-
GWHAAZE00000009	CDS	50705098	50705314	-
GWHAAZE00000009	CDS	50703982	50704170	-
GWHAAZE00000009	CDS	50703507	50703647	-
GWHAAZE00000009	CDS	50703334	50703408	-
GWHAAZE00000009	CDS	50703027	50703203	-
GWHAAZE00000009	CDS	50702830	50702921	-
GWHAAZE00000009	CDS	50702623	50702739	-
GWHAAZE00000009	CDS	50702189	50702303	-
GWHAAZE00000009	CDS	50701916	50701987	-
GWHAAZE00000009	CDS	50701165	50701361	-
GWHAAZE00000009	CDS	50700988	50701081	-
GWHAAZE00000009	CDS	50699564	50699670	-
GWHAAZE00000009	CDS	50699044	50699218	-
GWHAAZE00000009	CDS	50696980	50697159	-

Transcript Sequence
>GWHTAAZE030972 ATCCGCGGACTTGATGTATATCAAAGACCCCGATGTGAAAACTAGTAACCTGAGAGTGCTTAGCTCCGTCAAATAAAAACCAAAATTTCCAGTTTTCTTAACTAGAAAGCATCACTCGATTATTTCTCCAGTTTTCTCTCCTTCCCCCTTTCGTTTACAGAGGTCCTGCTGTTTTTGTACGGGAGAAAAACCAAAACCTCTTATCGATCTCGCCGTTCTACTCGCACTCTTAGCAGATATATAGATAGATAGATAACGAATCAAGATCTCCGGAGCTCGTGTGTTTGATTCCTTCACTTGGATCTCACTCGGATCTCTAGGGTTCTTCAGCCATCAATCTCCGATTTCCATCAACGAGGAGGACTCGCTTTCATCTCTGACAATGCCTCTCAGACTCGAAATCAAGAGAAAACTTGCTCAGAGATCAGAAAGAGTAAAATCTGTGGATCTACATCCGACGGAGCCATGGATTCTAGCAAGTTTATATTCCGGCACTGTCTGCATCTGGAACTACCAGTCCCAGACAATGGCTAAATCTTTTGAGGTTACCGAGTTACCAGTTAGATCAGCAAAGTTTATAGCACGCAAGCAGTGGGTGGTTGCTGGTGCTGATGACATGTTTATTCGTGTATACAATTACAATACAATGGATAAGGTTAAAGTATTCGAAGCGCACACAGACTATATTAGGTGTGTTGCTGTTCACCCTACCCTTCCTTATGTGCTATCATCATCGGATGACATGCTTATAAAGCTTTGGGACTGGGAGAAAGGTTGGCTGTGTACTCAAATTTTTGAGGGTCATTCCCATTATGTGATGCAAGTGACATTTAATCCGAAGGACACAAATACTTTTGCAAGCGCATCTCTTGATCGCACCATAAAGATCTGGAATCTTGGTTCACCTGACCCGAACTTTACATTGGATGCCCATCTCAAAGGGGTAAATTGTGTAGATTACTTCACAGGCGGTGATAAACCTTATCTGATCACCGGTTCTGATGATCACACTGCCAAGGTCTGGGATTATCAAACCAAAAGTTGTGTGCAGACGCTAGAAGGCCACACACACAATGTTTCTGCTGTATGTTTTCATCCTGAACTTCCCATAATCATTACAGGTTCTGAGGATGGTACTGTCCGTATATGGCATGCAACTACGTATAGACTCGAGAACACATTGAATTACGGGCTTGAAAGAGTTTGGGCTGTTGGATACATGAAAGGTTCAAGAAGGATTGTGATCGGTTACGATGAAGGAACTATTATGGTTAAAATTGGTCGAGAGGAACCTGTAGCAAGTATGGACAATAGTGGAAAGATTATATGGGCTAAGCACAACGAAATTCAGACTGTTAACATCAAGAGTGTGGGAGCAGATTATGAGGTTTCTGATGGAGAAAGATTACCTTTGGCTGTTAAAGAGTTGGGAACATGTGATCTTTACCCACAAAGCTTAAAACATAACCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGTGAATACATTATATATACTGCTTTGGCATGGAGAAATAGATCTTTTGGATCAGCATTGGAAATTGTTTGGTCGTCAGATGGAGAATATGCTGTTAGGGAAAGTACATCGAAGATTAAGATCTTCAGCAAAACCTTCCAGGAAAAGAAGAGCATCCGGCCAACGTTTTCTGCTGAGCGAATTTATGGTGGAACTTTACTGGCTATGTGCTCGAATGATTTTATTTGCTTTTACGACTGGGCCGAGTGCAGGTTGATTAGACGGATTGATGTTAATGTCAAAAACCTCTACTGGGCTGATAGTGGTGACTTGGTAGCCATTGCCAGTGATACATCATTCTACACGCTAAAGTACAATCGAGATGTAGTTTCTGCACATCTCGATAGTGGAAATTTGGCAGATGAGCAAGGGGTTGAAGATGCGTTCGAGCTTCTTTATGAAATAAATGAACGTGTTAGGACTGGCATATGGGTCGGGGATTGTTTCATTTACAACAACTCTTCCTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACCACGATGTTTCACCTGGATCGACCTATGTACCTGTTGGGATATCTAGCTAATCAAAGTAGGGTGTATCTCATTGACAAGGAGTTCAATGTTATTGGATACACCTTACTCCTCAACTTGATTGAGTACAAGACACTTGTAATGCGTGGTGACCTGGAACAAGCAAATGAGGTTTTACCATCGATACCTAAGGAGCACCTCAATAGTGTGGCCCGTTTCTTGGAATCACGAGGTATGATAGAGGATGCACTGGAAGTTGCCACAGATCCTGACTACAGATTTGAGCTGGCCATACAGCTGGGTAAGCTAGAGATTGCAAAGGAAATTGCTGCAGTGGCACAGAGCGAGTCCAAATGGAAGCAGTTGGGTGAATTAGCTATGTCCACTGGAATGATTGAGATGGCTGAAGAATGCTTGAAACATGCAAATGACTTGAGTGGCTTGTTGCTGCTTTATTCTTCTTTAGGAGATGCTGAAGAAATATCTAAGCTTGCATCAGTTGCTAAAGAGCATGGAAAAAATAATGTTGCCTTCCTTTGTCTATTCATGTTGGGTAAATTAGAAGAATGCCTGCAGCTGTTGATTGACAGCAATCGGATACCAGAGGCTGCTTTGATGGCACGATCTTATCTTCCAAGCAAGGTTTCAGAAATTGTTGCAACTTGGAGAAAAGACCTCAATAAGGTTAATCAGAAAGCTGCAGAATCTTTGGCCGATCCTGCAGAGTATCCAAATTTGTTTGAGGACTGGCAAGTAGCACTTGCTGTTGAATCAAAAGTTTCAGAGACAAGGGGTACTTATCCTCCAGCAGGGGAGTATATGAATTATGCTGATAGATCAAATGTCAACCTTGTAGAGGCTTTCAGAAACATGCAAATGGATGCAGAGAAACCACTTGAAAATGGTAGCTTGAATCACGAGGTATACTATTCATTCACATGTTTGATTTTCTTTCTCTCAGCTAATGTTGTAGAACATAATGATGGAGAGGAAGGATATGAAGAGGGCCAAGATGATGGGCAACAAGAAGGTCAAGAAGAGGCTGTAGTGGAGGATGTTGACTCTACAGATGGTGCAGTACTCGTTAATGGTAGCGAGGCTGACGAAGAGTGGGATACGAATAATGAAGGAAATCCGTCAGCCTAA

Network for GWHGAAZE030938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	138	174	8.10E-06
PF00400.33	WD40	181	218	0.00026
PF00400.33	WD40	224	262	5.30E-06
PF00400.33	WD40	267	303	6.60E-09
PF04053.15	Coatomer_WDAD	366	810	4.80E-166

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030117	cellular_component	membrane coat
GO:0005515	molecular_function	protein binding
GO:0005198	molecular_function	structural molecule activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	117.893
	SRR3591706	second leaf	56.912
	SRR3591707	mature leaf	31.535
	SRR3591708	Shoot apex	63.916
	SRR3591709	Stem	67.712
	SRR3591710	White floral bud	62.026
	SRR3591711	White flower	63.553
	SRR3591712	Green floral bud	91.133
	SRR3591713	Yellow flower	62.858
SRP173429	SRR8316895	Juvenile bud stage	44.289
	SRR8316896	Juvenile bud stage	59.149
	SRR8316897	Juvenile bud stage	31.443
	SRR8316894	Third green stage	30.552
	SRR8316900	Third green stage	76.595
	SRR8316901	Third green stage	71.171
	SRR8316898	Complete white stage	24.024
	SRR8316899	Complete white stage	63.707
	SRR8316903	Complete white stage	46.811
	SRR8316902	Silver flowering stage	22.582
	SRR8316904	Silver flowering stage	39.286
	SRR8316905	Silver flowering stage	17.035
	SRR8316906	Gold flowering stage	52.183
	SRR8316907	Gold flowering stage	51.000
	SRR8316908	Gold flowering stage	52.641
SRP132670	SRR6706286	Control	38.723
	SRR6706287	Light intensity 50%	51.622
	SRR6706288	Light intensity 20%	57.411
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.253
	CNS0095593	Slightly white alabastrum(diploid) 2	44.033
	CNS0095594	Slightly white alabastrum(diploid) 3	39.128
	CNS0095595	Whole white alabastrum(diploid) 2	39.892
	CNS0095596	Whole white alabastrum(diploid) 3	40.036
	CNS0095597	Whole white alabastrum(diploid) 4	32.609
	CNS0095598	Silvery flower (diploied) 1	32.642
	CNS0095599	Silvery flower (diploied) 2	31.857
	CNS0095600	Silvery flower (diploied) 3	60.911
	CNS0095601	Golden flower (diploid) 1	24.576
	CNS0095602	Golden flower (diploid) 2	54.500
	CNS0095603	Golden flower (diploid) 3	50.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.614
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.499
	CNS0095610	Silvery flower (tetraploid) 1	58.237
	CNS0095611	Silvery flower (tetraploid) 2	47.922
	CNS0095612	Silvery flower (tetraploid) 3	43.853
	CNS0095613	Golden flower (tetraploid) 1	27.652
	CNS0095614	Golden flower (tetraploid) 2	50.527
	CNS0095615	Golden flower (tetraploid) 3	41.426
CRA001975	CRR073297	Stem 1	61.548
	CRR073298	Stem 2	57.053
	CRR073299	Stem 3	52.074
	CRR073300	Leaf 1	67.927
	CRR073301	Leaf 2	57.256
	CRR073302	Leaf 3	57.796
	CRR073303	Juvenile bud 1	52.217
	CRR073304	Juvenile bud 2	45.463
	CRR073305	Juvenile bud 3	67.922
	CRR073306	Third green 1	21.607
	CRR073307	Third green 2	17.265
	CRR073308	Third green 3	23.948
	CRR073309	Second white 1	28.861
	CRR073310	Second white 2	29.531
	CRR073311	Second white 3	38.050
	CRR073312	Silver flowering 1	33.566
	CRR073313	Silver flowering 2	40.714
	CRR073314	Silver flowering 3	30.025
	CRR073315	Gold flowering 1	17.716
	CRR073316	Gold flowering 2	37.682
	CRR073317	Gold flowering 3	23.427
	CRR073318	Tawny withering 1	45.131
	CRR073319	Tawny withering 2	34.163
	CRR073320	Tawny withering 3	54.544