Detail information of GWHGAAZE030932


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009339001.11.6106E-147PREDICTED: DNA repair protein XRCC1 [Pyrus x bretschneideri]
Swissprottr|Q24JK4|XRCC1_ARATH2E-113DNA-repair protein XRCC1 {ECO:0000303|PubMed:11909950}
trEMBLtr|F6HX38|F6HX38_VITVI1E-146Putative uncharacterized protein {ECO:0000313|EMBL:CCB59508.1}
TAIR10AT1G80420.32E-92BRCT domain-containing DNA repair protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5060522550608237-
GWHAAZE00000009mRNA5060522550608237-
GWHAAZE00000009exon5060522550605554-
GWHAAZE00000009exon5060563750605723-
GWHAAZE00000009exon5060590350606013-
GWHAAZE00000009exon5060627550606397-
GWHAAZE00000009exon5060672450606852-
GWHAAZE00000009exon5060772550607913-
GWHAAZE00000009exon5060800750608237-
GWHAAZE00000009CDS5060800750608237-
GWHAAZE00000009CDS5060772550607913-
GWHAAZE00000009CDS5060672450606852-
GWHAAZE00000009CDS5060627550606397-
GWHAAZE00000009CDS5060590350606013-
GWHAAZE00000009CDS5060563750605723-
GWHAAZE00000009CDS5060522550605554-
Transcript Sequence

Network for GWHGAAZE030932

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00533.27BRCT731462.00E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10803XRCC1 Base excision repair map03410

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.137
SRR3591706second leaf14.060
SRR3591707mature leaf15.680
SRR3591708Shoot apex32.589
SRR3591709Stem30.441
SRR3591710White floral bud17.714
SRR3591711White flower16.910
SRR3591712Green floral bud15.522
SRR3591713Yellow flower14.605
SRP173429 SRR8316895Juvenile bud stage 17.756
SRR8316896Juvenile bud stage 23.528
SRR8316897Juvenile bud stage 10.156
SRR8316894Third green stage 8.022
SRR8316900Third green stage 21.567
SRR8316901Third green stage 16.673
SRR8316898Complete white stage 7.145
SRR8316899Complete white stage 23.121
SRR8316903Complete white stage 10.752
SRR8316902Silver flowering stage5.510
SRR8316904Silver flowering stage7.636
SRR8316905Silver flowering stage4.242
SRR8316906Gold flowering stage 13.988
SRR8316907Gold flowering stage 12.580
SRR8316908Gold flowering stage 14.992
SRP132670SRR6706286Control18.648
SRR6706287Light intensity 50%17.540
SRR6706288Light intensity 20%17.231
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.284
CNS0095593Slightly white alabastrum(diploid) 217.974
CNS0095594Slightly white alabastrum(diploid) 318.697
CNS0095595Whole white alabastrum(diploid) 214.291
CNS0095596Whole white alabastrum(diploid) 313.092
CNS0095597Whole white alabastrum(diploid) 412.285
CNS0095598Silvery flower (diploied) 120.119
CNS0095599Silvery flower (diploied) 215.793
CNS0095600Silvery flower (diploied) 312.517
CNS0095601Golden flower (diploid) 118.065
CNS0095602Golden flower (diploid) 212.810
CNS0095603Golden flower (diploid) 315.742
CNS0095604Slightly white alabastrum(tetraploid) 122.041
CNS0095605Slightly white alabastrum(tetraploid) 217.688
CNS0095606Slightly white alabastrum(tetraploid) 322.699
CNS0095607Whole white alabastrum(tetraploid) 112.290
CNS0095608Whole white alabastrum(tetraploid) 210.672
CNS0095609Whole white alabastrum(tetraploid) 315.055
CNS0095610Silvery flower (tetraploid) 113.570
CNS0095611Silvery flower (tetraploid) 217.065
CNS0095612Silvery flower (tetraploid) 316.266
CNS0095613Golden flower (tetraploid) 19.379
CNS0095614Golden flower (tetraploid) 212.868
CNS0095615Golden flower (tetraploid) 37.279
CRA001975CRR073297Stem 121.470
CRR073298Stem 217.091
CRR073299Stem 317.386
CRR073300Leaf 115.470
CRR073301Leaf 215.661
CRR073302Leaf 314.147
CRR073303Juvenile bud 111.221
CRR073304Juvenile bud 29.845
CRR073305Juvenile bud 39.481
CRR073306Third green 12.955
CRR073307Third green 22.063
CRR073308Third green 32.093
CRR073309Second white 12.061
CRR073310Second white 23.334
CRR073311Second white 32.579
CRR073312Silver flowering 11.966
CRR073313Silver flowering 21.305
CRR073314Silver flowering 31.540
CRR073315Gold flowering 19.377
CRR073316Gold flowering 213.527
CRR073317Gold flowering 33.369
CRR073318Tawny withering 112.655
CRR073319Tawny withering 213.515
CRR073320Tawny withering 313.277