Gene detail

Detail information of GWHGAAZE030925

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081001.1	0	PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Sesamum indicum]
COG	YP_007109056.1	5E-63	L-aspartate aminotransferase
Swissprot	tr\|Q9SIE1\|PAT_ARATH	1E-28	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (Precursor)
trEMBL	tr\|A0A061GC11\|A0A061GC11_THECC	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY26647.1}
TAIR10	AT1G80360.1	2E-155	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50506866	50510216	-
GWHAAZE00000009	mRNA	50506866	50510216	-
GWHAAZE00000009	exon	50506866	50507225	-
GWHAAZE00000009	exon	50507460	50507568	-
GWHAAZE00000009	exon	50507684	50507742	-
GWHAAZE00000009	exon	50507829	50507935	-
GWHAAZE00000009	exon	50508484	50508640	-
GWHAAZE00000009	exon	50508746	50508805	-
GWHAAZE00000009	exon	50509078	50509206	-
GWHAAZE00000009	exon	50509638	50509685	-
GWHAAZE00000009	exon	50510154	50510216	-
GWHAAZE00000009	CDS	50510154	50510216	-
GWHAAZE00000009	CDS	50509638	50509685	-
GWHAAZE00000009	CDS	50509078	50509206	-
GWHAAZE00000009	CDS	50508746	50508805	-
GWHAAZE00000009	CDS	50508484	50508640	-
GWHAAZE00000009	CDS	50507829	50507935	-
GWHAAZE00000009	CDS	50507684	50507742	-
GWHAAZE00000009	CDS	50507460	50507568	-
GWHAAZE00000009	CDS	50506866	50507225	-

Transcript Sequence
>GWHTAAZE030959 ATGGGTTCTTATGGGATGTTAGCGAGGAGGGTTATTCAGACTGATGAACCTGTTATGGTTCAGATACAAGAACTAATCAGGGGTGTTAAAGATCCAGTCTCCCTAGCTCAGGGCGTAGTGTATTGGCAACCGCCCAAGCAGGCTTTGGAAAAAGTGCAGGAGCTTATACAGGAGCCTTCAATTAGTCGTTATGGTGCTGATGAAGGGCTTCCTGAGCTTAGGGAGGCATTAATTAAAAAGTTGAATCAAGAAAATAAGTTGTACAAATCCTCAGTTATGGTCACTGCCGGTGCAAATCAGGCATTTGTAAATATTGTTCTTACATTGTGTGATGCTGGGGACTCGGTAGTCATGTATGCACCATACTACTTCAATTCATATATGTCATTCCAGATGACAGGCGTTACTGACATTCTGGTGGGTCCAAGTAATCCGAACACACTTCATCCAGATGCAGACTGGCTAGAAAGGACTTTAGTGGAAACTAAGCCAACCCCAAAGCTAGTCACAGTTGTTAATCCGGGCAACCCATCTGGAACCTACATTCCAGAACCCCTTCTCAAGAGGATATCAGATCTCTGCAGAGATGCTGGGTGCTGGCTTGTTGTAGATAACACGTATGAGTACTTTATGTATGATGGTTTGAAGCACGCGTGCATAGAAGGCAATCACATTGTTAACCTCTTTTCCTTTTCTAAAGCGTATGGAATGATGGGATGGCGAGTTGGATATCGATTGGCCCTTCACTCCTTAGAAGTGGGACCCGAGTGGGTGACCAATCAAGTGAACGACCTCGTCAAGAACAGAGCAATCGTTTTGGGGGCATTGTCTCCGTTGGGAGAGGGTGCTGTTAAAGGAGGAGAAGGTGCTATTTACCTGTGGGCTAAACTTCCCGAGAAGTACGTTGATGACTTTGAAGTAGTTCGCTGGCTAGCTAGGAAACACGGGGTGGTTGTAATCCCAGGAAGCGCTTGTGGCTGCGAGGGTTATGTTAGGGTCTCCTTTGGTGGGTTGTTAGAGGATGACTGTCGAGTTGCTTCGGAGAGGCTGAGACTTGGTTTTGAAGAACTGATCAGAGACGGAATGGTTTAG

Network for GWHGAAZE030925

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	33	264	1.60E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00837	ISS1, VAS1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.143
	SRR3591706	second leaf	19.340
	SRR3591707	mature leaf	27.609
	SRR3591708	Shoot apex	19.466
	SRR3591709	Stem	23.030
	SRR3591710	White floral bud	23.661
	SRR3591711	White flower	38.771
	SRR3591712	Green floral bud	15.829
	SRR3591713	Yellow flower	49.261
SRP173429	SRR8316895	Juvenile bud stage	8.625
	SRR8316896	Juvenile bud stage	13.284
	SRR8316897	Juvenile bud stage	5.686
	SRR8316894	Third green stage	5.926
	SRR8316900	Third green stage	11.936
	SRR8316901	Third green stage	12.984
	SRR8316898	Complete white stage	9.821
	SRR8316899	Complete white stage	23.955
	SRR8316903	Complete white stage	12.491
	SRR8316902	Silver flowering stage	20.430
	SRR8316904	Silver flowering stage	26.734
	SRR8316905	Silver flowering stage	15.880
	SRR8316906	Gold flowering stage	85.811
	SRR8316907	Gold flowering stage	76.755
	SRR8316908	Gold flowering stage	67.478
SRP132670	SRR6706286	Control	16.563
	SRR6706287	Light intensity 50%	17.287
	SRR6706288	Light intensity 20%	20.152
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.111
	CNS0095593	Slightly white alabastrum(diploid) 2	7.877
	CNS0095594	Slightly white alabastrum(diploid) 3	9.723
	CNS0095595	Whole white alabastrum(diploid) 2	7.807
	CNS0095596	Whole white alabastrum(diploid) 3	7.509
	CNS0095597	Whole white alabastrum(diploid) 4	10.486
	CNS0095598	Silvery flower (diploied) 1	21.126
	CNS0095599	Silvery flower (diploied) 2	16.621
	CNS0095600	Silvery flower (diploied) 3	27.030
	CNS0095601	Golden flower (diploid) 1	21.833
	CNS0095602	Golden flower (diploid) 2	30.953
	CNS0095603	Golden flower (diploid) 3	29.647
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.021
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.897
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.362
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.593
	CNS0095610	Silvery flower (tetraploid) 1	34.666
	CNS0095611	Silvery flower (tetraploid) 2	32.805
	CNS0095612	Silvery flower (tetraploid) 3	26.154
	CNS0095613	Golden flower (tetraploid) 1	32.860
	CNS0095614	Golden flower (tetraploid) 2	36.852
	CNS0095615	Golden flower (tetraploid) 3	44.699
CRA001975	CRR073297	Stem 1	14.754
	CRR073298	Stem 2	12.813
	CRR073299	Stem 3	11.003
	CRR073300	Leaf 1	15.650
	CRR073301	Leaf 2	17.880
	CRR073302	Leaf 3	12.234
	CRR073303	Juvenile bud 1	12.643
	CRR073304	Juvenile bud 2	10.440
	CRR073305	Juvenile bud 3	13.317
	CRR073306	Third green 1	5.525
	CRR073307	Third green 2	3.583
	CRR073308	Third green 3	3.798
	CRR073309	Second white 1	13.260
	CRR073310	Second white 2	16.692
	CRR073311	Second white 3	22.186
	CRR073312	Silver flowering 1	14.521
	CRR073313	Silver flowering 2	15.248
	CRR073314	Silver flowering 3	13.995
	CRR073315	Gold flowering 1	35.548
	CRR073316	Gold flowering 2	39.037
	CRR073317	Gold flowering 3	23.881
	CRR073318	Tawny withering 1	22.638
	CRR073319	Tawny withering 2	17.550
	CRR073320	Tawny withering 3	16.064