Gene detail

Detail information of GWHGAAZE030918

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285244.1	2.4388E-111	PREDICTED: V-type proton ATPase subunit c''1 [Vitis vinifera]
Swissprot	tr\|Q9SZY7\|VATO1_ARATH	3E-105	V-type proton ATPase subunit c''1
trEMBL	tr\|D7U0U1\|D7U0U1_VITVI	9E-112	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36237.3}
TAIR10	AT4G32530.1	3E-76	ATPase, F0/V0 complex, subunit C protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50405035	50407943	-
GWHAAZE00000009	mRNA	50405035	50407943	-
GWHAAZE00000009	exon	50407831	50407943	-
GWHAAZE00000009	exon	50407629	50407706	-
GWHAAZE00000009	exon	50405621	50405791	-
GWHAAZE00000009	exon	50405035	50405501	-
GWHAAZE00000009	CDS	50407831	50407943	-
GWHAAZE00000009	CDS	50407629	50407706	-
GWHAAZE00000009	CDS	50405621	50405791	-
GWHAAZE00000009	CDS	50405330	50405501	-
GWHAAZE00000009	three_prime_UTR	50405035	50405329	-

Transcript Sequence
>GWHTAAZE030952 ATGGTGGGGGCTTCAAGTTCATGGTCACGGGCGTTGGTTCAGATCTCTCCCTATACATTTTCAGCCGTTGGTATTGCCATTGCTATCGGTGTTTCTGTCCTCGGTGCTGCTTGGGGAATCTATATAACTGGAAGTAGTTTAATCGGTGCTGCCATCAAAGCTCCTCGAATTACTTCCAAAAATCTGATCAGTGTAATTTTTTGCGAGGCTGTTGCTATATATGGAGTTATTGTGGCAATCATCCTTCAAACAAAGCTAGAGAGTGTACCTGCATCCCAGATTCATGCACCAGAATCCCTGAGAGCTGGCTATGCAATCTTTGCATCTGGAATAATTGTGGGCTTTGCAAACCTTGTCTGCGGGTTGTGTGTTGGAATAATTGGAAGCAGCTGTGCCTTATCCGATGCACAAAACTCATCACTTTTTGTTAAGATCCTTGTGATTGAGATCTTTGGTAGTGCGCTCGGACTGTTTGGAGTGATTGTGGGAATAATCATGTCTGCTCAAGCAACATGGCCATCCAAGGCAGGGTGAGTGTTTATATTTATTGTATATCATGTTTGTACCGGGTGCTTGCATCTTTTCTTTTTCTTTTTTGGTTATTGAAATTTAAAATATTTTTGATATTTGTAATGCAAAACGTACAGTAGCAGAAAATGCTTATTTTATCTCTTTCCCTTCGTAATTTAGATGGAGTTTATTACATTTTTGTATGTTCAACTGATCCGTCAGTTTCATATTTGTATCTAACACTTCGTTATTTGTGCTACGTGGGTACGTACTACCGCCCATTACTGTTAAAATAAGAGGTGAAACTTTTCTTTTGATC

Network for GWHGAAZE030918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00137.22	ATP-synt_C	24	82	1.40E-14
PF00137.22	ATP-synt_C	107	166	8.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03661	ATPeV0B, ATP6F	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Phagosome	map04145
		Lysosome	map04142
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0033177	cellular_component	proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0033179	cellular_component	proton-transporting V-type ATPase, V0 domain
GO:0015078	molecular_function	proton transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.481
	SRR3591706	second leaf	27.462
	SRR3591707	mature leaf	22.758
	SRR3591708	Shoot apex	50.076
	SRR3591709	Stem	65.882
	SRR3591710	White floral bud	40.974
	SRR3591711	White flower	39.709
	SRR3591712	Green floral bud	57.021
	SRR3591713	Yellow flower	38.764
SRP173429	SRR8316895	Juvenile bud stage	35.559
	SRR8316896	Juvenile bud stage	59.300
	SRR8316897	Juvenile bud stage	29.187
	SRR8316894	Third green stage	24.259
	SRR8316900	Third green stage	85.544
	SRR8316901	Third green stage	76.792
	SRR8316898	Complete white stage	43.041
	SRR8316899	Complete white stage	94.652
	SRR8316903	Complete white stage	50.629
	SRR8316902	Silver flowering stage	33.697
	SRR8316904	Silver flowering stage	37.891
	SRR8316905	Silver flowering stage	22.065
	SRR8316906	Gold flowering stage	60.903
	SRR8316907	Gold flowering stage	78.861
	SRR8316908	Gold flowering stage	81.281
SRP132670	SRR6706286	Control	55.633
	SRR6706287	Light intensity 50%	60.525
	SRR6706288	Light intensity 20%	63.815
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	87.018
	CNS0095593	Slightly white alabastrum(diploid) 2	94.044
	CNS0095594	Slightly white alabastrum(diploid) 3	80.331
	CNS0095595	Whole white alabastrum(diploid) 2	99.395
	CNS0095596	Whole white alabastrum(diploid) 3	123.297
	CNS0095597	Whole white alabastrum(diploid) 4	100.765
	CNS0095598	Silvery flower (diploied) 1	49.104
	CNS0095599	Silvery flower (diploied) 2	59.742
	CNS0095600	Silvery flower (diploied) 3	63.545
	CNS0095601	Golden flower (diploid) 1	52.417
	CNS0095602	Golden flower (diploid) 2	55.313
	CNS0095603	Golden flower (diploid) 3	55.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	86.846
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.146
	CNS0095607	Whole white alabastrum(tetraploid) 1	97.519
	CNS0095608	Whole white alabastrum(tetraploid) 2	98.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.311
	CNS0095610	Silvery flower (tetraploid) 1	58.276
	CNS0095611	Silvery flower (tetraploid) 2	56.138
	CNS0095612	Silvery flower (tetraploid) 3	60.643
	CNS0095613	Golden flower (tetraploid) 1	57.254
	CNS0095614	Golden flower (tetraploid) 2	57.085
	CNS0095615	Golden flower (tetraploid) 3	49.430
CRA001975	CRR073297	Stem 1	51.108
	CRR073298	Stem 2	49.259
	CRR073299	Stem 3	60.928
	CRR073300	Leaf 1	66.130
	CRR073301	Leaf 2	67.226
	CRR073302	Leaf 3	87.101
	CRR073303	Juvenile bud 1	103.422
	CRR073304	Juvenile bud 2	81.528
	CRR073305	Juvenile bud 3	75.132
	CRR073306	Third green 1	48.590
	CRR073307	Third green 2	61.682
	CRR073308	Third green 3	55.956
	CRR073309	Second white 1	82.212
	CRR073310	Second white 2	52.608
	CRR073311	Second white 3	36.099
	CRR073312	Silver flowering 1	56.672
	CRR073313	Silver flowering 2	68.377
	CRR073314	Silver flowering 3	47.868
	CRR073315	Gold flowering 1	32.567
	CRR073316	Gold flowering 2	41.029
	CRR073317	Gold flowering 3	40.314
	CRR073318	Tawny withering 1	71.819
	CRR073319	Tawny withering 2	64.001
	CRR073320	Tawny withering 3	62.710