Gene detail

Detail information of GWHGAAZE030909

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008243707.1	3.8483E-160	PREDICTED: probable polygalacturonase At1g80170 [Prunus mume]
COG	YP_001179193.1	2E-26	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|Q94AJ5\|PGLR5_ARATH	4E-136	Probable polygalacturonase At1g80170 (Precursor)
trEMBL	tr\|M5WVG9\|M5WVG9_PRUPE	5E-160	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17231.1} (Fragment)
TAIR10	AT1G80170.1	9E-112	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50228811	50232759	+
GWHAAZE00000009	mRNA	50228811	50232759	+
GWHAAZE00000009	exon	50228811	50228963	+
GWHAAZE00000009	exon	50229942	50230000	+
GWHAAZE00000009	exon	50230107	50230194	+
GWHAAZE00000009	exon	50230745	50230915	+
GWHAAZE00000009	exon	50231012	50231182	+
GWHAAZE00000009	exon	50231300	50231320	+
GWHAAZE00000009	exon	50231438	50231645	+
GWHAAZE00000009	exon	50232038	50232119	+
GWHAAZE00000009	exon	50232216	50232324	+
GWHAAZE00000009	exon	50232469	50232759	+
GWHAAZE00000009	CDS	50228811	50228963	+
GWHAAZE00000009	CDS	50229942	50230000	+
GWHAAZE00000009	CDS	50230107	50230194	+
GWHAAZE00000009	CDS	50230745	50230915	+
GWHAAZE00000009	CDS	50231012	50231182	+
GWHAAZE00000009	CDS	50231300	50231320	+
GWHAAZE00000009	CDS	50231438	50231645	+
GWHAAZE00000009	CDS	50232038	50232119	+
GWHAAZE00000009	CDS	50232216	50232324	+
GWHAAZE00000009	CDS	50232469	50232759	+

Transcript Sequence
>GWHTAAZE030943 ATGTGCCTTATGCCGCTTTCTCGCGTTGCCGATCCACGCTTTGCCTTTCCATCTCCGCGCTCCTCCTCCTATGTCCACTCCTCCCCTCTTCTCCTACAACCACGCTGGGCCTCCCCAGGAGGAAAAAGCGGCGATCATCGGAATATCGTACAAGAAGGAGCTCATGGCCAAGATCAAGATGAGATCTTCTTTATCTTATCCTCATTCAACTCAAATTCTATAAACACACTCACGTCAAAGAGATTTCTCTCTGTCAATGACTATGGTGCTAAAGGAGATGGTCTTACTGATGACACTAAGGCTTTCAAAGTTGTTTGGAGGATAGCTTGTTCGTCACCTTCACGATTGAAAATTGTAGTTCCAGCTAAAAACTCTTACTTGATTAAGCCCATTGATTTTGTCGGTCCTTGCCAATCGAATGTGACTCTAAAGGCAAGAGTCAAGTTTAAACTACTCTTAAATTTACTTTCAATCTCTGGTACCATTATTGCTCCTGAAGATCCTCATGTCTGGGATGGTCTTGATCCACATAAATGGCTCTTCTTCCATAATGTAACGCACCTCACTGTAGAAGGAGGAGGGGTAGTTAATGGGATGGGTCGGGAATGGTGGGCTCGGTCATGCAAGATTAACGTAACAAATCCATGTCGACATGCTCCAACGGCCATGACTTTCCATAGATGCAAGAATTTGAAAGTGAGGAAACTTATGATGGTAAATAGTCAACAAATGCACATGGTCTTCAGTCACTGTGTTGGGGTTGTGGCATCCTATCTGAGAGTTATAGCACCCGCTCTTAGCCCTAACACAGATGGATTCCACATAAGTGCATCTACTCACGTTGAAATCAAGGACAGCATTATTGGAACAGGAGATGATTGCATATCTATAGTAAGCAATTCGACGAGAATTCGTGTTAAAAACATAACCTGTGGTCCAGGACATGGAATAAGCATCGGAAGCTTGGGAAAATGGAACTCGTGGGATCATGTGCATGATGTAAGAGTTAACGGGGCAATTCTATCCAATACTGAAAATGGGGTGAGGATCAAAACATGGCAGGGAGGTAGTGGCTTCGCCAGCAAGATTACTTTTCAGAATGTGTGGGTGGAAAATGTCTCAAATCCAATCATAATAGACCAATATTACTGTGATTCACTGTTTCCATGTCCGAACCAGGTAATGATTGAGTTTCAGCATGTGATTTTAAAAGATATTACAACAGAAAAGAGAGGATATAGAGTATCTCTTATTTCTGGAAAAGCAGACGATTCGTGGGTACTTTTGTGTTATTATGTTAGGTTTAGTGTAGCCCCCACGAGTTCTAGTCTTCTCGATGTGTGGTGGTTGTAA

Network for GWHGAAZE030909

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	110	421	1.50E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.367
	SRR3591706	second leaf	16.881
	SRR3591707	mature leaf	17.321
	SRR3591708	Shoot apex	26.503
	SRR3591709	Stem	56.611
	SRR3591710	White floral bud	28.204
	SRR3591711	White flower	33.788
	SRR3591712	Green floral bud	21.344
	SRR3591713	Yellow flower	19.370
SRP173429	SRR8316895	Juvenile bud stage	18.139
	SRR8316896	Juvenile bud stage	24.845
	SRR8316897	Juvenile bud stage	9.264
	SRR8316894	Third green stage	13.849
	SRR8316900	Third green stage	29.339
	SRR8316901	Third green stage	28.900
	SRR8316898	Complete white stage	13.418
	SRR8316899	Complete white stage	39.390
	SRR8316903	Complete white stage	24.523
	SRR8316902	Silver flowering stage	13.850
	SRR8316904	Silver flowering stage	13.753
	SRR8316905	Silver flowering stage	8.217
	SRR8316906	Gold flowering stage	20.266
	SRR8316907	Gold flowering stage	19.125
	SRR8316908	Gold flowering stage	10.268
SRP132670	SRR6706286	Control	19.661
	SRR6706287	Light intensity 50%	28.057
	SRR6706288	Light intensity 20%	30.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.277
	CNS0095593	Slightly white alabastrum(diploid) 2	21.264
	CNS0095594	Slightly white alabastrum(diploid) 3	21.183
	CNS0095595	Whole white alabastrum(diploid) 2	19.065
	CNS0095596	Whole white alabastrum(diploid) 3	17.880
	CNS0095597	Whole white alabastrum(diploid) 4	22.720
	CNS0095598	Silvery flower (diploied) 1	25.461
	CNS0095599	Silvery flower (diploied) 2	21.253
	CNS0095600	Silvery flower (diploied) 3	14.192
	CNS0095601	Golden flower (diploid) 1	22.128
	CNS0095602	Golden flower (diploid) 2	12.321
	CNS0095603	Golden flower (diploid) 3	10.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.837
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.867
	CNS0095610	Silvery flower (tetraploid) 1	6.323
	CNS0095611	Silvery flower (tetraploid) 2	6.887
	CNS0095612	Silvery flower (tetraploid) 3	7.029
	CNS0095613	Golden flower (tetraploid) 1	1.738
	CNS0095614	Golden flower (tetraploid) 2	2.912
	CNS0095615	Golden flower (tetraploid) 3	1.718
CRA001975	CRR073297	Stem 1	17.228
	CRR073298	Stem 2	18.128
	CRR073299	Stem 3	7.039
	CRR073300	Leaf 1	23.963
	CRR073301	Leaf 2	23.089
	CRR073302	Leaf 3	11.753
	CRR073303	Juvenile bud 1	8.328
	CRR073304	Juvenile bud 2	6.238
	CRR073305	Juvenile bud 3	7.448
	CRR073306	Third green 1	2.468
	CRR073307	Third green 2	4.973
	CRR073308	Third green 3	3.454
	CRR073309	Second white 1	4.141
	CRR073310	Second white 2	4.413
	CRR073311	Second white 3	2.334
	CRR073312	Silver flowering 1	0.774
	CRR073313	Silver flowering 2	0.868
	CRR073314	Silver flowering 3	0.436
	CRR073315	Gold flowering 1	5.974
	CRR073316	Gold flowering 2	9.257
	CRR073317	Gold flowering 3	5.055
	CRR073318	Tawny withering 1	10.302
	CRR073319	Tawny withering 2	15.648
	CRR073320	Tawny withering 3	9.763