Gene detail

Detail information of GWHGAAZE030904

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98115.1	3.1597E-164	unnamed protein product [Coffea canephora]
COG	YP_004468960.1	3E-26	putative phospholipase/carboxylesterase family protein
trEMBL	tr\|A0A068TP61\|A0A068TP61_COFCA	1E-164	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98115.1}
TAIR10	AT3G15650.2	9E-103	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50193887	50197029	+
GWHAAZE00000009	mRNA	50193887	50197029	+
GWHAAZE00000009	exon	50193887	50193917	+
GWHAAZE00000009	exon	50194190	50194304	+
GWHAAZE00000009	exon	50195430	50195466	+
GWHAAZE00000009	exon	50195571	50195640	+
GWHAAZE00000009	exon	50195730	50195834	+
GWHAAZE00000009	exon	50195988	50196138	+
GWHAAZE00000009	exon	50196456	50196538	+
GWHAAZE00000009	exon	50196722	50196815	+
GWHAAZE00000009	exon	50196945	50197029	+
GWHAAZE00000009	CDS	50193887	50193917	+
GWHAAZE00000009	CDS	50194190	50194304	+
GWHAAZE00000009	CDS	50195430	50195466	+
GWHAAZE00000009	CDS	50195571	50195640	+
GWHAAZE00000009	CDS	50195730	50195834	+
GWHAAZE00000009	CDS	50195988	50196138	+
GWHAAZE00000009	CDS	50196456	50196538	+
GWHAAZE00000009	CDS	50196722	50196815	+
GWHAAZE00000009	CDS	50196945	50197029	+

Transcript Sequence
>GWHTAAZE030938 ATGAGTTATTCAAATCCTTCTATGAGCTCTGGTAGCAGAACAGCTAGAAGAACACCTGAATTTGGAAGGACATATGTCGTTAGGCCGAAAGGGAAACACCAAGCAACAATTGTTTGGCTTCACGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAACTCTTGGAAAACCTTCCTCTTCCTAATGTTAAATGGATATGCCCAACTGCTCCTACTCGCCCGGTAGCTGTACTTGGTGGATTCCCTTGCACCGCATGGTTTGACGTGGGAGAGTTATCAGAAGATGGTCCGGATGATATTGAGGGTTTAGATGCTTCAGTCACTCACATTGCAAACTTGTTGTCAACGGAGCCCGCTGACATTAAACTAGGTATTGGGGGATTTAGTATGGGTGCTGCAACTGCACTTTACTCAGCAACTTGCTTTGCACAGGGAAATTACGGAAATGGAAACCCTTACCCTGTCAACTTAAGGGCTATTGTTGGTCTAAGTGGCTGGCTTCCAGCTTCCAGGAGCTTGAGGAACAAGATAGAAGAATCTAATGAGGCAGCTAGACGTGCCGTAGCTCTTCCCATCTTGCTCTGTCATGGAATAAGTGATGAAGTGGTCCCTTACAAATATGGAGAGAAATCTACCCACTGCTTGAGCTTAGCTGGGTTTCGAAACCTTACTTTCAAAACCTATGATGGGCTTGGTCATTACACAGTCCCTAGGGAGATGGATGAGGTGTGCAACTGGCTAAATGCGAGACTAGGGCTTGAGGGATCACGCTGA

Network for GWHGAAZE030904

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02230.17	Abhydrolase_2	25	248	6.00E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06130	LYPLA2	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.000
	SRR3591706	second leaf	5.217
	SRR3591707	mature leaf	2.853
	SRR3591708	Shoot apex	28.199
	SRR3591709	Stem	18.198
	SRR3591710	White floral bud	7.506
	SRR3591711	White flower	3.145
	SRR3591712	Green floral bud	10.002
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	8.403
	SRR8316896	Juvenile bud stage	7.614
	SRR8316897	Juvenile bud stage	4.134
	SRR8316894	Third green stage	4.895
	SRR8316900	Third green stage	9.587
	SRR8316901	Third green stage	7.438
	SRR8316898	Complete white stage	4.712
	SRR8316899	Complete white stage	9.522
	SRR8316903	Complete white stage	11.234
	SRR8316902	Silver flowering stage	9.561
	SRR8316904	Silver flowering stage	11.003
	SRR8316905	Silver flowering stage	4.554
	SRR8316906	Gold flowering stage	7.206
	SRR8316907	Gold flowering stage	5.661
	SRR8316908	Gold flowering stage	2.154
SRP132670	SRR6706286	Control	5.295
	SRR6706287	Light intensity 50%	7.591
	SRR6706288	Light intensity 20%	6.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.014
	CNS0095593	Slightly white alabastrum(diploid) 2	36.149
	CNS0095594	Slightly white alabastrum(diploid) 3	15.182
	CNS0095595	Whole white alabastrum(diploid) 2	14.191
	CNS0095596	Whole white alabastrum(diploid) 3	13.485
	CNS0095597	Whole white alabastrum(diploid) 4	15.097
	CNS0095598	Silvery flower (diploied) 1	6.491
	CNS0095599	Silvery flower (diploied) 2	4.287
	CNS0095600	Silvery flower (diploied) 3	1.297
	CNS0095601	Golden flower (diploid) 1	2.366
	CNS0095602	Golden flower (diploid) 2	0.689
	CNS0095603	Golden flower (diploid) 3	0.984
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.845
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.950
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.411
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.685
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.869
	CNS0095610	Silvery flower (tetraploid) 1	3.676
	CNS0095611	Silvery flower (tetraploid) 2	0.753
	CNS0095612	Silvery flower (tetraploid) 3	2.375
	CNS0095613	Golden flower (tetraploid) 1	0.073
	CNS0095614	Golden flower (tetraploid) 2	0.090
	CNS0095615	Golden flower (tetraploid) 3	0.066
CRA001975	CRR073297	Stem 1	7.168
	CRR073298	Stem 2	8.119
	CRR073299	Stem 3	11.523
	CRR073300	Leaf 1	11.494
	CRR073301	Leaf 2	11.414
	CRR073302	Leaf 3	16.049
	CRR073303	Juvenile bud 1	23.711
	CRR073304	Juvenile bud 2	5.901
	CRR073305	Juvenile bud 3	14.935
	CRR073306	Third green 1	7.877
	CRR073307	Third green 2	8.226
	CRR073308	Third green 3	8.815
	CRR073309	Second white 1	0.263
	CRR073310	Second white 2	0.790
	CRR073311	Second white 3	0.166
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.170
	CRR073314	Silver flowering 3	0.240
	CRR073315	Gold flowering 1	63.304
	CRR073316	Gold flowering 2	60.267
	CRR073317	Gold flowering 3	16.163
	CRR073318	Tawny withering 1	39.617
	CRR073319	Tawny withering 2	36.038
	CRR073320	Tawny withering 3	54.322