Gene detail

Detail information of GWHGAAZE030889

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010497012.1	2.06072E-69	PREDICTED: signal recognition particle 54 kDa protein 1 isoform X2 [Camelina sativa]
COG	YP_183899.1	1E-40	signal recognition particle protein Srp54
Swissprot	tr\|P49967\|SR543_ARATH	2E-69	Signal recognition particle 54 kDa protein 3
trEMBL	tr\|A0A078HFM1\|A0A078HFM1_BRANA	7E-69	BnaA06g09990D protein {ECO:0000313\|EMBL:CDY36546.1}
TAIR10	AT1G48900.1	1E-51	Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49891150	49897087	+
GWHAAZE00000009	mRNA	49891150	49897087	+
GWHAAZE00000009	exon	49891150	49891697	+
GWHAAZE00000009	exon	49894278	49894428	+
GWHAAZE00000009	exon	49894511	49894659	+
GWHAAZE00000009	exon	49896252	49896352	+
GWHAAZE00000009	exon	49896963	49897087	+
GWHAAZE00000009	CDS	49891150	49891697	+
GWHAAZE00000009	CDS	49894278	49894428	+
GWHAAZE00000009	CDS	49894511	49894659	+
GWHAAZE00000009	CDS	49896252	49896352	+
GWHAAZE00000009	CDS	49896963	49897087	+

Transcript Sequence
>GWHTAAZE030923 ATGGATGTTTTTGGCGTTGCTGAAGAAGATGATGATTGGGAGAGTACGGTGGAAGTTCTAGTTGACGCTGGAAATGCGGTGGATGATTTAATCCAGCATGAAGGCCAAGGCGTTGGTGGTGGCAGCTGGGATATTAAGACAGGTGTTGCCGGCAACCTAGAGGTGATGGAAGTTCTGAAGGAATCCAAATTACTGAGGAATAGGATAAACAACGAGGTCGAAAAATCGAAGTATGCAATATGGCGTATCTTTAGAATTCTCGGGTTTTCCCTTGGCATTCATATGGCAACTCTTGCAGCATCTGCTGTTGAAGGAAAAAATTGGGATTGTCCTTCGTGCGATCTTCAATTGCTTTGTGCCTGTCTGTACTTCAGTTTATCTGTCTATCTTTTCTGTTGCTTGAGTGATCTGCTAGCGAGTCAGGGGTCAGGGCTGAGGTTACAAACCGAGGCGGCTGTTGTAATGGAGATTGGAATACCACTCGGAATAGATGTGCGTGATTATCTTGATATATGGCCGAGGGGTATCGACACATTCCAAAAACCCAGCTACACGGAGTCAGATCCTGTGAAAATTGCAGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAAATTTGATCTTATAATAGTTGATACCAGTGGGCAACACAAACAGGAAGCATCTGTCTTTGAAGAAATGTGTCAAGTTGCTGAAGCAACGAAACTAGATCTTGTTACTTTTCTTATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCTCAAGCATTCAAGCAAAGTGTTGCAGTTAGAGCTGTGATTGTTATTAAGATGGATGGTCATGCAAAGGGAGGCGGTGCTCTTAGTGCTGTTGCGGCAACCAAGAGTCCAGTCATATTTATTGGCACGGGGGAACATATCGACGAGTTCAACTGTTTTGATGTTAAATCATTTGTCCGTCGTCATTTAGAGTTGAATACTTCCAACCTTAATCTGGTGAACGAGTCATGGATAATGAGGATAGCAAGGGGATCTGGCCATCCAACAGATGCTGAGGCAGTTTGGTTGCCCAAAAACCTTGATGAGGCAACTTAG

Network for GWHGAAZE030889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00448.23	SRP54	178	316	2.10E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03106	SRP54, ffh	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.131
	SRR3591706	second leaf	0.075
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.648
	SRR3591709	Stem	0.077
	SRR3591710	White floral bud	0.353
	SRR3591711	White flower	0.599
	SRR3591712	Green floral bud	0.540
	SRR3591713	Yellow flower	0.135
SRP173429	SRR8316895	Juvenile bud stage	0.698
	SRR8316896	Juvenile bud stage	0.273
	SRR8316897	Juvenile bud stage	0.196
	SRR8316894	Third green stage	0.112
	SRR8316900	Third green stage	0.151
	SRR8316901	Third green stage	0.316
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.215
	SRR8316903	Complete white stage	0.107
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.002
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.008
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.096
	SRR6706287	Light intensity 50%	0.131
	SRR6706288	Light intensity 20%	0.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.450
	CNS0095593	Slightly white alabastrum(diploid) 2	0.389
	CNS0095594	Slightly white alabastrum(diploid) 3	0.464
	CNS0095595	Whole white alabastrum(diploid) 2	0.399
	CNS0095596	Whole white alabastrum(diploid) 3	0.078
	CNS0095597	Whole white alabastrum(diploid) 4	0.323
	CNS0095598	Silvery flower (diploied) 1	0.196
	CNS0095599	Silvery flower (diploied) 2	0.598
	CNS0095600	Silvery flower (diploied) 3	0.139
	CNS0095601	Golden flower (diploid) 1	0.223
	CNS0095602	Golden flower (diploid) 2	0.226
	CNS0095603	Golden flower (diploid) 3	0.228
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.191
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.399
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.178
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.108
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.227
	CNS0095610	Silvery flower (tetraploid) 1	0.073
	CNS0095611	Silvery flower (tetraploid) 2	0.127
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.096
CRA001975	CRR073297	Stem 1	0.038
	CRR073298	Stem 2	0.402
	CRR073299	Stem 3	0.328
	CRR073300	Leaf 1	0.089
	CRR073301	Leaf 2	0.662
	CRR073302	Leaf 3	0.097
	CRR073303	Juvenile bud 1	0.260
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.046
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.083
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.025
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.131
	CRR073319	Tawny withering 2	0.026
	CRR073320	Tawny withering 3	0.009