Gene detail

Detail information of GWHGAAZE030888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO48631.1	2.52484E-09	hypothetical protein CISIN_1g011010mg [Citrus sinensis]
Swissprot	tr\|P49972\|SR542_SOLLC	3E-11	Signal recognition particle 54 kDa protein 2
trEMBL	tr\|A0A067ECJ5\|A0A067ECJ5_CITSI	9E-10	Uncharacterized protein {ECO:0000313\|EMBL:KDO48631.1}
TAIR10	AT1G48900.2	0.00000002	Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49881858	49884427	+
GWHAAZE00000009	mRNA	49881858	49884427	+
GWHAAZE00000009	exon	49881858	49881926	+
GWHAAZE00000009	exon	49884308	49884427	+
GWHAAZE00000009	CDS	49881858	49881926	+
GWHAAZE00000009	CDS	49884308	49884427	+

Transcript Sequence
>GWHTAAZE030922 TCTGGGAAAACCACAACGTGTACAAAATATGCATATTACCACCAAAAGAAGGGCTGGAAACCTGCTATGGTTATGTCAATGTTTGCAGGTTTTACTGTTAATTCACTGCCAAACCACAGTTCAAAAGAAAGCCAGGCAAACATCAAACATTGGATGATTATGTTTCTACTTCTATGTTATACTGATTAA

Network for GWHGAAZE030888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03106	SRP54, ffh	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.014
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.508
	SRR8316896	Juvenile bud stage	1.221
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.592
	SRR8316900	Third green stage	1.032
	SRR8316901	Third green stage	1.281
	SRR8316898	Complete white stage	0.193
	SRR8316899	Complete white stage	1.642
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.057
	SRR6706287	Light intensity 50%	0.113
	SRR6706288	Light intensity 20%	0.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.748
	CNS0095593	Slightly white alabastrum(diploid) 2	1.234
	CNS0095594	Slightly white alabastrum(diploid) 3	0.229
	CNS0095595	Whole white alabastrum(diploid) 2	0.991
	CNS0095596	Whole white alabastrum(diploid) 3	0.577
	CNS0095597	Whole white alabastrum(diploid) 4	3.321
	CNS0095598	Silvery flower (diploied) 1	1.257
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.159
	CNS0095601	Golden flower (diploid) 1	0.362
	CNS0095602	Golden flower (diploid) 2	0.120
	CNS0095603	Golden flower (diploid) 3	0.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.303
	CRR073298	Stem 2	0.222
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.147
	CRR073301	Leaf 2	0.210
	CRR073302	Leaf 3	0.068
	CRR073303	Juvenile bud 1	0.316
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.074
	CRR073306	Third green 1	0.078
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000