Detail information of GWHGAAZE030869


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273039.20PREDICTED: BRCA1-associated protein [Vitis vinifera]
trEMBLtr|F6H2R1|F6H2R1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46503.1}
TAIR10AT2G26000.22E-119zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4963430549643667-
GWHAAZE00000009mRNA4963430549643667-
GWHAAZE00000009exon4964344049643667-
GWHAAZE00000009exon4964222249642337-
GWHAAZE00000009exon4964200649642114-
GWHAAZE00000009exon4964175249641892-
GWHAAZE00000009exon4964082449640921-
GWHAAZE00000009exon4963690349637076-
GWHAAZE00000009exon4963551649635762-
GWHAAZE00000009exon4963536649635419-
GWHAAZE00000009exon4963499249635141-
GWHAAZE00000009exon4963474249634806-
GWHAAZE00000009exon4963455649634610-
GWHAAZE00000009exon4963430549634460-
GWHAAZE00000009CDS4964344049643667-
GWHAAZE00000009CDS4964222249642337-
GWHAAZE00000009CDS4964200649642114-
GWHAAZE00000009CDS4964175249641892-
GWHAAZE00000009CDS4964082449640921-
GWHAAZE00000009CDS4963690349637076-
GWHAAZE00000009CDS4963551649635762-
GWHAAZE00000009CDS4963536649635419-
GWHAAZE00000009CDS4963499249635141-
GWHAAZE00000009CDS4963474249634806-
GWHAAZE00000009CDS4963455649634610-
GWHAAZE00000009CDS4963430549634460-
Transcript Sequence

Network for GWHGAAZE030869

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07576.13BRAP2761721.30E-37
PF02148.20zf-UBP2883263.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10632BRAP Ras signaling pathway map04014

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.997
SRR3591706second leaf13.061
SRR3591707mature leaf18.618
SRR3591708Shoot apex15.520
SRR3591709Stem25.582
SRR3591710White floral bud27.752
SRR3591711White flower30.551
SRR3591712Green floral bud17.513
SRR3591713Yellow flower28.902
SRP173429 SRR8316895Juvenile bud stage 8.657
SRR8316896Juvenile bud stage 11.711
SRR8316897Juvenile bud stage 6.286
SRR8316894Third green stage 5.379
SRR8316900Third green stage 12.352
SRR8316901Third green stage 12.952
SRR8316898Complete white stage 6.746
SRR8316899Complete white stage 15.341
SRR8316903Complete white stage 14.372
SRR8316902Silver flowering stage13.395
SRR8316904Silver flowering stage18.604
SRR8316905Silver flowering stage7.881
SRR8316906Gold flowering stage 25.592
SRR8316907Gold flowering stage 25.329
SRR8316908Gold flowering stage 24.577
SRP132670SRR6706286Control8.508
SRR6706287Light intensity 50%9.240
SRR6706288Light intensity 20%9.762
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.744
CNS0095593Slightly white alabastrum(diploid) 28.656
CNS0095594Slightly white alabastrum(diploid) 37.162
CNS0095595Whole white alabastrum(diploid) 27.088
CNS0095596Whole white alabastrum(diploid) 37.990
CNS0095597Whole white alabastrum(diploid) 47.670
CNS0095598Silvery flower (diploied) 114.422
CNS0095599Silvery flower (diploied) 210.874
CNS0095600Silvery flower (diploied) 316.927
CNS0095601Golden flower (diploid) 18.645
CNS0095602Golden flower (diploid) 214.818
CNS0095603Golden flower (diploid) 315.396
CNS0095604Slightly white alabastrum(tetraploid) 112.948
CNS0095605Slightly white alabastrum(tetraploid) 29.621
CNS0095606Slightly white alabastrum(tetraploid) 318.017
CNS0095607Whole white alabastrum(tetraploid) 19.971
CNS0095608Whole white alabastrum(tetraploid) 27.453
CNS0095609Whole white alabastrum(tetraploid) 313.165
CNS0095610Silvery flower (tetraploid) 124.363
CNS0095611Silvery flower (tetraploid) 222.096
CNS0095612Silvery flower (tetraploid) 326.971
CNS0095613Golden flower (tetraploid) 117.625
CNS0095614Golden flower (tetraploid) 218.248
CNS0095615Golden flower (tetraploid) 325.258
CRA001975CRR073297Stem 116.102
CRR073298Stem 212.046
CRR073299Stem 39.480
CRR073300Leaf 114.369
CRR073301Leaf 211.284
CRR073302Leaf 36.869
CRR073303Juvenile bud 18.271
CRR073304Juvenile bud 28.884
CRR073305Juvenile bud 38.634
CRR073306Third green 19.438
CRR073307Third green 25.305
CRR073308Third green 39.398
CRR073309Second white 19.488
CRR073310Second white 216.708
CRR073311Second white 320.028
CRR073312Silver flowering 114.591
CRR073313Silver flowering 211.813
CRR073314Silver flowering 310.907
CRR073315Gold flowering 15.822
CRR073316Gold flowering 213.222
CRR073317Gold flowering 34.839
CRR073318Tawny withering 112.175
CRR073319Tawny withering 212.088
CRR073320Tawny withering 311.514