Gene detail

Detail information of GWHGAAZE030866

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010276726.1	PREDICTED: plasma membrane ATPase 4-like [Nelumbo nucifera]
COG	YP_005270382.1	plasma-membrane proton-efflux P-type ATPase
Swissprot	tr\|Q03194\|PMA4_NICPL	Plasma membrane ATPase 4
trEMBL	tr\|A0A061GA14\|A0A061GA14_THECC	H(+)-ATPase 9 {ECO:0000313\|EMBL:EOY26002.1}
TAIR10	AT1G80660.1	H(+)-ATPase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49591667	49597353	+
GWHAAZE00000009	mRNA	49591667	49597353	+
GWHAAZE00000009	exon	49591667	49591723	+
GWHAAZE00000009	exon	49592084	49592182	+
GWHAAZE00000009	exon	49592277	49592729	+
GWHAAZE00000009	exon	49592837	49593163	+
GWHAAZE00000009	exon	49593250	49593369	+
GWHAAZE00000009	exon	49593472	49593594	+
GWHAAZE00000009	exon	49593688	49593792	+
GWHAAZE00000009	exon	49595269	49595578	+
GWHAAZE00000009	exon	49595695	49596209	+
GWHAAZE00000009	exon	49596296	49596469	+
GWHAAZE00000009	exon	49596576	49596758	+
GWHAAZE00000009	exon	49596884	49597065	+
GWHAAZE00000009	exon	49597171	49597353	+
GWHAAZE00000009	CDS	49591667	49591723	+
GWHAAZE00000009	CDS	49592084	49592182	+
GWHAAZE00000009	CDS	49592277	49592729	+
GWHAAZE00000009	CDS	49592837	49593163	+
GWHAAZE00000009	CDS	49593250	49593369	+
GWHAAZE00000009	CDS	49593472	49593594	+
GWHAAZE00000009	CDS	49593688	49593792	+
GWHAAZE00000009	CDS	49595269	49595578	+
GWHAAZE00000009	CDS	49595695	49596209	+
GWHAAZE00000009	CDS	49596296	49596469	+
GWHAAZE00000009	CDS	49596576	49596758	+
GWHAAZE00000009	CDS	49596884	49597065	+
GWHAAZE00000009	CDS	49597171	49597267	+
GWHAAZE00000009	three_prime_UTR	49597268	49597353	+

Transcript Sequence
>GWHTAAZE030900 ATGGCAGATAACAAGGGAATCAGCTTGGAGGAAATCAAGAAGGAGAACGTTGATCTTGAAAGCAAATTTCTCAAATTCTTGGGGTTTATGTGGAATCCTTTGTCATGGGTTATGGAGATGGCTGCTATCATGGCAATTGCTTTGGCAAATGGAGGGGGCGAGCCTCCAGATTGGCAAGATTTCATTGGTATCGTCGCATTGCTCCTCATCAATTCCACCATTAGTTTCATTGAAGAAAACAACGCAGGCAATGCAGCTGCAGCACTCATGGCTGGTCTTGCTCCAAAAACAAAGGTATTGAGGGATGGAAAATGGGGCGAGCAAGACGCAGCAATCCTTGTACCTGGAGATATCATAAGCATCAAATTGGGAGACATAGTCCCTGCAGATGCTCGTCTTCTTGATGGGGATCCTCTCAAGATTGATCAATCTGCTCTCACCGGAGAATCGTTGCCCGTTACAAAGCACGCAGGTGATGAAGTATTTTCAGGTTCAACCTGCAAACAAGGTGAGATTGAGGCTGTTGTGATTGCCACTGGAGTCCACACCTTCTTTGGAAAGGCTGCTCATCTGGTTGACAGCACTAATAATGTGGGCCACTTCCAAAAGGTGTTGACGGCTATTGGAAACTTCTGCATATGCTCCATTGCAGTGGGGATAGTTATAGAGGTAGTAGTGATGTACCCCATTCAGCACCGCAGATATAGGGATGGAATTGATAACCTATTGGTTCTTCTCATTGGAGGCATCCCAATAGCCATGCCAACCGTCTTGTCTGTGACAATGGCTATTGGGTCCCACCGATTATCAGAGCAAGGAGCTATCACTAAGAGGATGACGGCTATTGAAGAAATGGCAGGAATGGATGTACTTTGCAGTGACAAGACTGGGACTCTCACCCTCAACAAGCTCACCGTTGACAAAACCTTAATTGAGGTCTTTGCCAAGGATTTGGACAAGGAAACTGTAGTTCTTCTTGGAGCTAGGGCTTCAAGGGTGGAGAATCAAGATGCGATAGATGCTTGTATTGTTGGAATGCTGGGCGATCCCAAAGAGGCTAGAGCTGGGATCACTGAAGTGCATTTCCTTCCCTTTGACCCTGTGGGCAAGCGCACGGCCATAACCTACATCGACTCCAGTGGCAACTGGCACCGTGTTAGCAAAGGTGCACCTGAGCAGATAATTGAACTGTGCAACCTTAAGCCAGATGTGAGGAACAAGGTCCTCTCCATCATTGATAAGTTCGCTGAACGTGGTCTACGTTCTCTGGGTGTTGCTCAACAGACGGTACCAGAAAAGACCAAGGAGAGTGCAGGAGGGCCATGGGTATTTGTGGGTCTCTTGCCTCTTTTTGACCCTCCAAGGCATGATAGTGCAGAAACCATTCGCCGTGCTCTTAACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAGTTAGCCATTGGCAAAGAGACTGGTCGAAGGCTTGGCATGGGAACCAACATGTATCCCTCTTCCTCACTTCTTGGCCAGAACAAGGACGAAGCAATAGCCAACCTCCCTGTTGAGGAGCTCATTGAGAAGGCCGATGGCTTTGCCGGAGTCTTCCCCGAGCACAAGTATGAGATTGTAAAAAAGCTACAAGAGAGAAACCATATCTGCGGGATGACTGGAGATGGTGTGAACGATGCCCCAGCTTTAAAGAAGGCAGATATTGGTATTGCGGTGGCAGATGCGACCGATGCAGCCCGAGGTGCATCTGATATAGTCCTGACGGAGCCTGGGCTAAGTGTGATTGTGAGCGCCGTGTTGACAAGCAGAGCCATTTTCCAAAGGATGAAGAATTACACCATTTATGCAGTTTCCATCACTATCCGTATAGTGCTAGGTTTCTTACTCATTGCACTCATCTGGAAGTTTGACTTCTCGCCCTTCATGGTTCTCATTATCGCAATTCTCAATGACGGAACCATCATGACCATCTCTAAAGACAAAGTGAAGCCCTCCCCAATGCCCGACTCGTGGAAGCTCAAGGAGATATTTGCCACTGGGATTGTTCTGGGCACTTACCTGGCTGTCATGACTGTCGTTTTCTTCTGGGCTGCTCAAGAGTCCAACTTCTTTTCTGATAAATTTGGAGTAAGACCAATTAGGAACCATGAGGATGAGCTAACAGCAGCTCTGTACCTGCAAGTGAGTATAGTGAGCCAGGCTCTCATCTTTGTTACTAGGTCCAGGAGCTGGTCCTTTGTGGAACGACCGGGCCTTCTTCTCGTCATTGCTTTTTTTATTGCTCAGCTGGTTGCTACCTTAATTGCGGTGTATGCAAATTGGACATTTGCGAGAGTCAAAGGTATAGGGTGGGGATGGGCTGGTGTTATCTGGATCTACAGCGTTGTCTTCTACTTACCTCTGGACATTTTCAAGTTTATCATCCGATATGCATTGACTGGCAAGGCCTGGAATAATCTTATTGACAACAGGACTGCTTTCACTACGAAGAAGGATTATGGTAAAGGAGAGAGAGAGGCACAATGGGCTTTGGCTCAACGCACCCTTCATGGCCTCCAGCCTCCAGATACGACTGAGCTCTTCCAAGACAAGAACAGCTACAGGGAGTTGTCTGAGATTGCTGAACAAGCCAAGAGACGCGCTGAAGTTGCTAGGCTAAGGGAACTCCACACGCTCAAGGGTCATGTTGAATCTGTGGTGAAGCTAAAGGGTCTCGACATTGAAACCATTCAACAACACTACACGGTTTAGAGCGTGGTGAAGCTGAAGGGTCTTGACATTGAGACCGTGCAACCAAGACTTGTAATTTGGCCAAGCATGTTGGAAAATCGAGAAAC

Network for GWHGAAZE030866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00122.21	E1-E2_ATPase	94	271	2.80E-48
PF00702.27	Hydrolase	288	565	9.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.383
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	0.683
	SRR3591709	Stem	2.478
	SRR3591710	White floral bud	15.143
	SRR3591711	White flower	1.152
	SRR3591712	Green floral bud	553.336
	SRR3591713	Yellow flower	0.117
SRP173429	SRR8316895	Juvenile bud stage	72.147
	SRR8316896	Juvenile bud stage	267.762
	SRR8316897	Juvenile bud stage	138.617
	SRR8316894	Third green stage	108.337
	SRR8316900	Third green stage	348.052
	SRR8316901	Third green stage	377.079
	SRR8316898	Complete white stage	0.105
	SRR8316899	Complete white stage	1.438
	SRR8316903	Complete white stage	0.244
	SRR8316902	Silver flowering stage	0.013
	SRR8316904	Silver flowering stage	0.012
	SRR8316905	Silver flowering stage	0.042
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	212.173
	SRR6706287	Light intensity 50%	198.587
	SRR6706288	Light intensity 20%	184.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	310.213
	CNS0095593	Slightly white alabastrum(diploid) 2	219.806
	CNS0095594	Slightly white alabastrum(diploid) 3	355.009
	CNS0095595	Whole white alabastrum(diploid) 2	384.305
	CNS0095596	Whole white alabastrum(diploid) 3	511.747
	CNS0095597	Whole white alabastrum(diploid) 4	432.255
	CNS0095598	Silvery flower (diploied) 1	0.754
	CNS0095599	Silvery flower (diploied) 2	1.320
	CNS0095600	Silvery flower (diploied) 3	0.128
	CNS0095601	Golden flower (diploid) 1	0.783
	CNS0095602	Golden flower (diploid) 2	0.212
	CNS0095603	Golden flower (diploid) 3	0.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	732.660
	CNS0095605	Slightly white alabastrum(tetraploid) 2	744.928
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.671
	CNS0095607	Whole white alabastrum(tetraploid) 1	1054.366
	CNS0095608	Whole white alabastrum(tetraploid) 2	1210.412
	CNS0095609	Whole white alabastrum(tetraploid) 3	701.900
	CNS0095610	Silvery flower (tetraploid) 1	0.372
	CNS0095611	Silvery flower (tetraploid) 2	0.696
	CNS0095612	Silvery flower (tetraploid) 3	1.640
	CNS0095613	Golden flower (tetraploid) 1	1.079
	CNS0095614	Golden flower (tetraploid) 2	0.834
	CNS0095615	Golden flower (tetraploid) 3	0.843
CRA001975	CRR073297	Stem 1	117.510
	CRR073298	Stem 2	143.051
	CRR073299	Stem 3	64.421
	CRR073300	Leaf 1	271.433
	CRR073301	Leaf 2	270.570
	CRR073302	Leaf 3	149.203
	CRR073303	Juvenile bud 1	197.739
	CRR073304	Juvenile bud 2	142.999
	CRR073305	Juvenile bud 3	0.218
	CRR073306	Third green 1	0.812
	CRR073307	Third green 2	0.336
	CRR073308	Third green 3	0.792
	CRR073309	Second white 1	0.252
	CRR073310	Second white 2	0.312
	CRR073311	Second white 3	0.186
	CRR073312	Silver flowering 1	0.864
	CRR073313	Silver flowering 2	0.583
	CRR073314	Silver flowering 3	0.564
	CRR073315	Gold flowering 1	0.426
	CRR073316	Gold flowering 2	0.221
	CRR073317	Gold flowering 3	0.049
	CRR073318	Tawny withering 1	0.542
	CRR073319	Tawny withering 2	0.917
	CRR073320	Tawny withering 3	0.437