Gene detail

Detail information of GWHGAAZE030849

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAG35658.1AF204925_1	5.2564E-129	transcription factor WRKY4 [Petroselinum crispum]
Swissprot	tr\|Q9SAH7\|WRK40_ARATH	1E-94	Probable WRKY transcription factor 40
trEMBL	tr\|Q9FR29\|Q9FR29_PETCR	2E-129	Transcription factor WRKY4 {ECO:0000313\|EMBL:AAG35658.1}
TAIR10	AT1G80840.1	6E-72	WRKY DNA-binding protein 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49326864	49328510	-
GWHAAZE00000009	mRNA	49326864	49328510	-
GWHAAZE00000009	exon	49326864	49327337	-
GWHAAZE00000009	exon	49327657	49328043	-
GWHAAZE00000009	exon	49328228	49328299	-
GWHAAZE00000009	exon	49328433	49328510	-
GWHAAZE00000009	CDS	49328433	49328510	-
GWHAAZE00000009	CDS	49328228	49328299	-
GWHAAZE00000009	CDS	49327657	49328043	-
GWHAAZE00000009	CDS	49326864	49327337	-

Transcript Sequence
>GWHTAAZE030883 ATGGAATACACAAGTTTGGTTGATACTTCTTTGGATCTTAATTCCAATCCTCTCCAATTTCTCGTCGAAGCTCATCCGAAAAGAGAGGTGCAAAGCAAATTCTATGAGTTTGGGATGAACAATATCGACAGCTCACCACCAAAACAAGAGACAGACGCAATTGTAGAGGAGTTGAACCGGGTGAGCGAAGAAAACAAGAGGCTAACAGAGATGTTAACAGTGGCTTGTGAGAATTACAACGCTTTGAGAAACCAGTTGGTTGATTATATGACCAAAAATAATCATCTTAGTCTTGATCATCAACAACAAAAACCCGGTGTGATGGATACTAATACAACGGATAATGTTTTGAGAAAGAGGAAATTAGCTGAAAATACCACCAATATTATTGTTAATAATAATAATATGGATGGGCGCAATGGAAATTCAGAGAGTAGCTCTAGTGATGATGATTCTTGCAAGAAACCAAGAGAAGAACACCTCAAACCCAAGATTTCAAGGTCCTATGTACGAACCGAAGCATCCGATTCAAGCCTTGTAGTGAAGGATGGATATCAATGGAGGAAATATGGGCAAAAGGTAACAAGAGATAACCCTTCACCAAGAGCATACTTCAAATGCTCATTTGCTCCAAGTTGCCCTGTGAAAAAGAAGGTTCAAAGAAGTGTTGAAGATCAATCTGTTGTGGTTGCTACTTACGAAGGGGAGCACAACCATCCACACCCCTCCAGGCACGAGCCGAGTTCCGGTTCAGGTTCCAACAGCTGCATCACGCTCGCGGGTTCCATCCCCAGCTCGACCACGTCTGGACCCACCATTACTCTTGATTTAACTAAACCATCATCAAAACCCATTGAGGACCTTAAGGTTTCGGAGTCTAACCGGAGAGTAGATTCGCCTCAATTTCAACGGTTTTTGGTGGATCAAATGGCTAATTCGTTAACGAAAGATCCGAGTTTCAAAGCAGCACTAGCAGCGGCCATTTCAGGAAAAATTCTACAACATAATTAG

Network for GWHGAAZE030849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	182	240	2.60E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.474
	SRR3591706	second leaf	5.917
	SRR3591707	mature leaf	8.285
	SRR3591708	Shoot apex	9.062
	SRR3591709	Stem	47.499
	SRR3591710	White floral bud	67.064
	SRR3591711	White flower	100.082
	SRR3591712	Green floral bud	22.469
	SRR3591713	Yellow flower	51.212
SRP173429	SRR8316895	Juvenile bud stage	26.054
	SRR8316896	Juvenile bud stage	17.171
	SRR8316897	Juvenile bud stage	42.788
	SRR8316894	Third green stage	7.540
	SRR8316900	Third green stage	8.811
	SRR8316901	Third green stage	23.300
	SRR8316898	Complete white stage	1.942
	SRR8316899	Complete white stage	77.433
	SRR8316903	Complete white stage	4.716
	SRR8316902	Silver flowering stage	14.359
	SRR8316904	Silver flowering stage	20.903
	SRR8316905	Silver flowering stage	10.858
	SRR8316906	Gold flowering stage	46.259
	SRR8316907	Gold flowering stage	26.160
	SRR8316908	Gold flowering stage	59.367
SRP132670	SRR6706286	Control	4.460
	SRR6706287	Light intensity 50%	9.044
	SRR6706288	Light intensity 20%	4.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.813
	CNS0095593	Slightly white alabastrum(diploid) 2	160.915
	CNS0095594	Slightly white alabastrum(diploid) 3	157.495
	CNS0095595	Whole white alabastrum(diploid) 2	129.823
	CNS0095596	Whole white alabastrum(diploid) 3	3.589
	CNS0095597	Whole white alabastrum(diploid) 4	73.286
	CNS0095598	Silvery flower (diploied) 1	201.673
	CNS0095599	Silvery flower (diploied) 2	203.506
	CNS0095600	Silvery flower (diploied) 3	64.313
	CNS0095601	Golden flower (diploid) 1	218.727
	CNS0095602	Golden flower (diploid) 2	163.142
	CNS0095603	Golden flower (diploid) 3	157.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.512
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.667
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.679
	CNS0095610	Silvery flower (tetraploid) 1	5.553
	CNS0095611	Silvery flower (tetraploid) 2	3.169
	CNS0095612	Silvery flower (tetraploid) 3	21.401
	CNS0095613	Golden flower (tetraploid) 1	9.498
	CNS0095614	Golden flower (tetraploid) 2	11.795
	CNS0095615	Golden flower (tetraploid) 3	5.636
CRA001975	CRR073297	Stem 1	28.135
	CRR073298	Stem 2	26.602
	CRR073299	Stem 3	11.679
	CRR073300	Leaf 1	55.032
	CRR073301	Leaf 2	58.698
	CRR073302	Leaf 3	27.716
	CRR073303	Juvenile bud 1	37.623
	CRR073304	Juvenile bud 2	36.873
	CRR073305	Juvenile bud 3	48.212
	CRR073306	Third green 1	8.660
	CRR073307	Third green 2	10.823
	CRR073308	Third green 3	10.913
	CRR073309	Second white 1	20.020
	CRR073310	Second white 2	26.074
	CRR073311	Second white 3	18.970
	CRR073312	Silver flowering 1	34.886
	CRR073313	Silver flowering 2	26.776
	CRR073314	Silver flowering 3	21.610
	CRR073315	Gold flowering 1	26.663
	CRR073316	Gold flowering 2	95.186
	CRR073317	Gold flowering 3	49.711
	CRR073318	Tawny withering 1	132.383
	CRR073319	Tawny withering 2	535.613
	CRR073320	Tawny withering 3	138.306