Gene detail

Detail information of GWHGAAZE030847

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655086.1	0	PREDICTED: ABC transporter C family member 13 isoform X3 [Vitis vinifera]
COG	NP_969385.1	3E-119	multidrug ABC transporter permease/ATPase
Swissprot	tr\|Q9SKX0\|AB13C_ARATH	0	ABC transporter C family member 13
trEMBL	tr\|A0A097P9P6\|A0A097P9P6_HEVBR	0	ABC transporter family protein {ECO:0000313\|EMBL:AIU41639.1}
TAIR10	AT2G07680.1	0	multidrug resistance-associated protein 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49289665	49315103	+
GWHAAZE00000009	mRNA	49289665	49315103	+
GWHAAZE00000009	exon	49289665	49289826	+
GWHAAZE00000009	exon	49289924	49290052	+
GWHAAZE00000009	exon	49292418	49292518	+
GWHAAZE00000009	exon	49292690	49292750	+
GWHAAZE00000009	exon	49293992	49294243	+
GWHAAZE00000009	exon	49294960	49295029	+
GWHAAZE00000009	exon	49296063	49296123	+
GWHAAZE00000009	exon	49299492	49299596	+
GWHAAZE00000009	exon	49300344	49300441	+
GWHAAZE00000009	exon	49301430	49301496	+
GWHAAZE00000009	exon	49302279	49302396	+
GWHAAZE00000009	exon	49302502	49302618	+
GWHAAZE00000009	exon	49302703	49302783	+
GWHAAZE00000009	exon	49302879	49303133	+
GWHAAZE00000009	exon	49304084	49304185	+
GWHAAZE00000009	exon	49304271	49304338	+
GWHAAZE00000009	exon	49304676	49304807	+
GWHAAZE00000009	exon	49304935	49305082	+
GWHAAZE00000009	exon	49309148	49309431	+
GWHAAZE00000009	exon	49309593	49309749	+
GWHAAZE00000009	exon	49310263	49310438	+
GWHAAZE00000009	exon	49310512	49310623	+
GWHAAZE00000009	exon	49310714	49310767	+
GWHAAZE00000009	exon	49313006	49313087	+
GWHAAZE00000009	exon	49313308	49313390	+
GWHAAZE00000009	exon	49313507	49313617	+
GWHAAZE00000009	exon	49313686	49313847	+
GWHAAZE00000009	exon	49313996	49314213	+
GWHAAZE00000009	exon	49314391	49314580	+
GWHAAZE00000009	exon	49314680	49314847	+
GWHAAZE00000009	exon	49315023	49315103	+
GWHAAZE00000009	CDS	49289665	49289826	+
GWHAAZE00000009	CDS	49289924	49290052	+
GWHAAZE00000009	CDS	49292418	49292518	+
GWHAAZE00000009	CDS	49292690	49292750	+
GWHAAZE00000009	CDS	49293992	49294243	+
GWHAAZE00000009	CDS	49294960	49295029	+
GWHAAZE00000009	CDS	49296063	49296123	+
GWHAAZE00000009	CDS	49299492	49299596	+
GWHAAZE00000009	CDS	49300344	49300441	+
GWHAAZE00000009	CDS	49301430	49301496	+
GWHAAZE00000009	CDS	49302279	49302396	+
GWHAAZE00000009	CDS	49302502	49302618	+
GWHAAZE00000009	CDS	49302703	49302783	+
GWHAAZE00000009	CDS	49302879	49303133	+
GWHAAZE00000009	CDS	49304084	49304185	+
GWHAAZE00000009	CDS	49304271	49304338	+
GWHAAZE00000009	CDS	49304676	49304807	+
GWHAAZE00000009	CDS	49304935	49305082	+
GWHAAZE00000009	CDS	49309148	49309431	+
GWHAAZE00000009	CDS	49309593	49309749	+
GWHAAZE00000009	CDS	49310263	49310438	+
GWHAAZE00000009	CDS	49310512	49310623	+
GWHAAZE00000009	CDS	49310714	49310767	+
GWHAAZE00000009	CDS	49313006	49313087	+
GWHAAZE00000009	CDS	49313308	49313390	+
GWHAAZE00000009	CDS	49313507	49313617	+
GWHAAZE00000009	CDS	49313686	49313847	+
GWHAAZE00000009	CDS	49313996	49314213	+
GWHAAZE00000009	CDS	49314391	49314580	+
GWHAAZE00000009	CDS	49314680	49314847	+
GWHAAZE00000009	CDS	49315023	49315103	+

Transcript Sequence
>GWHTAAZE030881 ATGCAGATATCTTTACCGGGGAAGGTTTTATTGTATCTTCTACCTGCTCTTGGAACATGCATGGCTTGCATTGACATACTTTTGCTTCTAAAGGAAACACTAAGCGGTTACTCTGCTGTGTATCATGAGTGGCTACTTAGGTGCTCTCAACTCTCGCTCTGGGCTACAATTCTACTTGTCTCAAGTTATGGCTACTGGTTTATTCTCTTTAATTGGATCCTATGCCTCTGGTGGATCGTTAAACCATTGTTGGGGATCCCTCATCTACTAACAGCCTTTTTGTCGTTGGAGGCTTTAATATGTGTTAAAGAGAGTTTTGCAGCTTTGGTGGGTATCATGTTTGGGATCTTGGTTAATGTTATCAGAATAAAGGAGGCATATCTTAGAAACAGTTCGACAGAAGAACCACTTCTCTCTTGCCAACTGGACATTGAAGGAGGTCATCGTGACCGTGGATTTGCCTACAGCTTTTGGAATATGTTGACATTCAAATCTATCGCATCTGTAATGGAATGTGGTGCAAAAAAGCAGCTTGACTTTGAAGATTTGCTTCAGCTACCAGTTGATTTGGATCCTTCGTCCTGCAATCATATGCTGCTGAACTGTTGGCAAGCTCAACAGAGAAATGATTTTGCTCATCCGTCCTTGTTTAGAGCAATTTGTTGTGCATATGGATGGCCATATTTTCGTCTAGGGCTTTTAAAGGTACTCAATGATTGTATCGGTTTTGCGGGGCCGTTGCTTCTCAATAAGCTTATTCGGTTTCTTCAACAAGGTTCTAAGAATTTTGATGGCTATATTCTTGCAGTATCCTTGGGTCTCACATCTATACTAAACCTTGCGGAAAGGTCAAAATTTTCTGAAGGGGAAATTCAGACATTCATGTCTGTTGATGCTGATCGAACAGTCAACTTGTGCAACAGTTGTCATGATATGTGGAGCTTGCCTTTACAAATTGGAGTTGCACTTTATCTGTTGTATACACAAGTGAAGTTTGCTTTTGTTTCTGGACTGGCGATAACTATTTTGTTGATACCAGTGAATAAATGGATTGCGGAGTTGATTGCAAATGCAACCCAAAATATGATGGCACAAAAGGATGAGAGAATTAGAAAGACTGGCGAACTTTTGATGTACATTCGCACTTTGAAAATGTATGGCTGGGAGCTCCTTTTTGCTAGTTGGTTGATGAAGACAAGATCCTCTGAAGTGACTCATCTATCAACTAGGAAGTATCTGGATGCATGGTGTGTATTCTTTTGGGCAACTACCCCAACTCTTTTCTCTTTTTGCACATTTGGACTCTATGTATTGATGGGAAATCAACTTGATGCTGCTACGGTTTTCACTTGTCTTGCTCTGTTCAATAATTTGATCTCTCCGCTTAACTCATTCCCATGGGTCATTAATGGATTAATTGATGCAATCATATCTACCCGGCGATTGACAAAGTTCCTCTCCTGTTCTGAGGATGGACCTCAAAAGGAACAGATAGAAGATCCGTCATCATCATATCACTCTAATCAGCAATCTGATTTTTCATATGAAGAAATGGCTGTTGTTATTACTGATGCATGTTGTGCATGGGCAAGCAGTAGTCAGGATGACCTGGAGCTGGTCCTGGATCATGTGACTCTAGCGCTTCCAAGGGGTTCCTTTGTTGCAGTAGTTGGAGAGGTTGGTTCAGGTAAATCATCCTTGTTATATTCGATTCTTGGGGAAACAAGGCTCATCAACGGATCAATATACTCTAGCGGATCTGTAGCATATGTGCCACAGGTCCCCTGGATCCTCTCTGGAACCATCCGTGACAATATTCTGTTTGGAAAGGATTACGATCCAGAAAGGTACTCTATTGTACTAGAGGCTTGTGCACTGGATATTGATGTTTCTTTAATGGTTGGAGGTGATATGGCTTATATTGGGGAGAAAGGATTAAACTTATCAGGTGGACAGAGAGCTCGTCTAGCTCTTGCCAGGGCTGTCTACAATCGTGCTGATATATTCATGCTTGATGATGTCCTTAGTGCAGTTGATGCACAAGTTGCACGCTGGATTTTATCCAATGCAATTCTTAGTCCTCTTGTGAATCAGCATACACGTGTTCTATGTACCCATAACATTCAGGCAATATCTTCTGCCGATTTGATTATTGTCATGGATAGAGGACGTGTGAAGTGGGTGGGAAGTCCAGCTGATTCATCTGTTTCTTCATTTGTAAAAGTCTCCCCATCAGAAGAATTTAACATATCTTCTCAAGTTCAAAGACAAGAAATAAGTTCAAATAATTATACTGAAGACCAACAGAAATTACTTTTAGAGAGTGATGGTATACATGTTTCTGAAGAAGCACAAGTTATCATTGAAGTTGAACCGAGGAAAGAGGGCAGAGTCGAGCCCACCGTTTACAAAAATTATGCTGCATTTTCTGGCTGGTTTATTTCAATTGTAACATGCCTCTCAGCAATTTTAATGCAAGCTTCTCGCAATGGCAATGATATGTGGCTGTCCTATTGGGTTGATTCAACAGGAACCTATCACAAAGAGCATTCTACATCCTTTTACCTGATTATCCTCTGCGTATTTGCCATCATCAATTCCTTGCTGACGTTAGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACGTGCTGCTGTTCAGGTGCACGATAGACTACTAAATAAACTAGTCGATGCACCTGTCAACTTCTTTGATCAAACCCCAACCGGAAGAATACTCAACAGGTTGTCTTCAGACCTTTATACGATTGATGATTCTCTTCCATTCATTCTCAACATTCTCCTGGCCAATTTTGTTGGTCTCTTAGGGATTGTTGTAGTATTGTCATATGTCCAGGTCATCTTTTTGCTTCTATTGCTGCCGTTTTGGTATATCTACAGCAAATTACAGATATTCCGAACATCTGACTTTGTATCAGAGGACTTCTTATTCAGAAACAAATGCAAGTTTGTGGCTTTCCCTGCGCCTTCAGCGTTTATTGTCTCCTTTATTGCTGTGATGGCTATTGTTGGATCTCATGGACGTCTCCCCATCAGTTTAGGTACCCCAGGGCTGGTTGGCTTGGCTCTTTCTTACGCAGCTCCAATTGTATCTTTGTTGGGAAGCTTTTTGACTAGTTTTACTGAAACCGAGAAGGAAATGGTTTCCATTGAGAGGGTCCTTCAGTATATGGATGTGCCTCAAGAAGAACTCAATGGATGCCAGATACTAAATCCAGATTGGCCGTTTGAAGGACATATCGAGTTTCAGAATGTAACACTTAAATATATGCCATCGTTGCCTGCTGCATTACATAATCTTACTTTCACCATTGCTGGAGGAACACAGGCTGATATTCTTGCAACTGTACAAAATCAGATTGGAATTGTTGGAAGAACAGGTGCTGGGAAATCTAGTATCTTAAATGCCCTATTCCGCCTGAATCCAATATGTAGTGGACGTATATTAGTGGATGGGATAAACATAGCTGATGTTTCCGTGAGAGATCTTCGCTCACATTTTGCTGTTGTTCCGCAGACTTCGTTTCTCTTTTCAGGATCGTTAAGGGATAACTTGGATCCATTCCGGGTGAATGATGAATTGAAAATCTGGGAGGCACTTGAGAAATGCCACGTGGATGAGGAAGTTAAAGCAGCAGGGGGGCTGGATATCCATGTAAAAGAGTTCGGAACATCATTTTCTGTTGGGCAGAGACAGCTCCTTTGCCTTGCACGTGCATTTCTAAAGTCTTCCAAGGTACTCTGTTTGGATGAGTGTACAGCGAATGTAGACACCGAAACAGCTTCAAAGCTACAAGAAGCTATAGCTAGTGAATGCAGAGGCATGACTATGATCACCATTGCTCACCGCATTTCTACAGTTCTGAACATGGACAGTCTCCTGATTCTTGACCAGGGGACATTGGTTGAACAAGGAAACCCACAGGCTCTTCTAAAGGACGAGTTATCCAGATTTTCAAGTTTTGCTACAGCTTCGGGAATATAG

Network for GWHGAAZE030847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	285	461	8.70E-13
PF00005.28	ABC_tran	541	673	1.40E-16
PF00664.24	ABC_membrane	818	974	9.40E-23
PF00005.28	ABC_tran	1126	1261	1.80E-23

Protein Sequence

>GWHPAAZE030865
MQISLPGKVLLYLLPALGTCMACIDILLLLKETLSGYSAVYHEWLLRCSQLSLWATILLVSSYGYWFILFNWILCLWWIVKPLLGIPHLLTAFLSLEALICVKESFAALVGIMFGILVNVIRIKEAYLRNSSTEEPLLSCQLDIEGGHRDRGFAYSFWNMLTFKSIASVMECGAKKQLDFEDLLQLPVDLDPSSCNHMLLNCWQAQQRNDFAHPSLFRAICCAYGWPYFRLGLLKVLNDCIGFAGPLLLNKLIRFLQQGSKNFDGYILAVSLGLTSILNLAERSKFSEGEIQTFMSVDADRTVNLCNSCHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAELIANATQNMMAQKDERIRKTGELLMYIRTLKMYGWELLFASWLMKTRSSEVTHLSTRKYLDAWCVFFWATTPTLFSFCTFGLYVLMGNQLDAATVFTCLALFNNLISPLNSFPWVINGLIDAIISTRRLTKFLSCSEDGPQKEQIEDPSSSYHSNQQSDFSYEEMAVVITDACCAWASSSQDDLELVLDHVTLALPRGSFVAVVGEVGSGKSSLLYSILGETRLINGSIYSSGSVAYVPQVPWILSGTIRDNILFGKDYDPERYSIVLEACALDIDVSLMVGGDMAYIGEKGLNLSGGQRARLALARAVYNRADIFMLDDVLSAVDAQVARWILSNAILSPLVNQHTRVLCTHNIQAISSADLIIVMDRGRVKWVGSPADSSVSSFVKVSPSEEFNISSQVQRQEISSNNYTEDQQKLLLESDGIHVSEEAQVIIEVEPRKEGRVEPTVYKNYAAFSGWFISIVTCLSAILMQASRNGNDMWLSYWVDSTGTYHKEHSTSFYLIILCVFAIINSLLTLVRAFSFAFGGLRAAVQVHDRLLNKLVDAPVNFFDQTPTGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGIVVVLSYVQVIFLLLLLPFWYIYSKLQIFRTSDFVSEDFLFRNKCKFVAFPAPSAFIVSFIAVMAIVGSHGRLPISLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSIERVLQYMDVPQEELNGCQILNPDWPFEGHIEFQNVTLKYMPSLPAALHNLTFTIAGGTQADILATVQNQIGIVGRTGAGKSSILNALFRLNPICSGRILVDGINIADVSVRDLRSHFAVVPQTSFLFSGSLRDNLDPFRVNDELKIWEALEKCHVDEEVKAAGGLDIHVKEFGTSFSVGQRQLLCLARAFLKSSKVLCLDECTANVDTETASKLQEAIASECRGMTMITIAHRISTVLNMDSLLILDQGTLVEQGNPQALLKDELSRFSSFATASGI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05674	ABCC10	ABC transporters	map02010

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.534
	SRR3591706	second leaf	13.942
	SRR3591707	mature leaf	13.088
	SRR3591708	Shoot apex	22.869
	SRR3591709	Stem	20.523
	SRR3591710	White floral bud	20.188
	SRR3591711	White flower	15.643
	SRR3591712	Green floral bud	18.394
	SRR3591713	Yellow flower	8.202
SRP173429	SRR8316895	Juvenile bud stage	13.929
	SRR8316896	Juvenile bud stage	18.298
	SRR8316897	Juvenile bud stage	9.416
	SRR8316894	Third green stage	5.909
	SRR8316900	Third green stage	11.061
	SRR8316901	Third green stage	10.600
	SRR8316898	Complete white stage	2.926
	SRR8316899	Complete white stage	12.346
	SRR8316903	Complete white stage	6.816
	SRR8316902	Silver flowering stage	2.966
	SRR8316904	Silver flowering stage	5.555
	SRR8316905	Silver flowering stage	1.820
	SRR8316906	Gold flowering stage	4.738
	SRR8316907	Gold flowering stage	5.346
	SRR8316908	Gold flowering stage	5.534
SRP132670	SRR6706286	Control	4.810
	SRR6706287	Light intensity 50%	5.769
	SRR6706288	Light intensity 20%	6.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.919
	CNS0095593	Slightly white alabastrum(diploid) 2	6.452
	CNS0095594	Slightly white alabastrum(diploid) 3	6.967
	CNS0095595	Whole white alabastrum(diploid) 2	5.189
	CNS0095596	Whole white alabastrum(diploid) 3	4.043
	CNS0095597	Whole white alabastrum(diploid) 4	4.858
	CNS0095598	Silvery flower (diploied) 1	7.500
	CNS0095599	Silvery flower (diploied) 2	4.300
	CNS0095600	Silvery flower (diploied) 3	4.292
	CNS0095601	Golden flower (diploid) 1	4.462
	CNS0095602	Golden flower (diploid) 2	5.213
	CNS0095603	Golden flower (diploid) 3	4.555
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.740
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.996
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.611
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.194
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.638
	CNS0095610	Silvery flower (tetraploid) 1	10.292
	CNS0095611	Silvery flower (tetraploid) 2	6.937
	CNS0095612	Silvery flower (tetraploid) 3	5.806
	CNS0095613	Golden flower (tetraploid) 1	4.069
	CNS0095614	Golden flower (tetraploid) 2	6.473
	CNS0095615	Golden flower (tetraploid) 3	4.868
CRA001975	CRR073297	Stem 1	13.432
	CRR073298	Stem 2	10.009
	CRR073299	Stem 3	6.353
	CRR073300	Leaf 1	6.927
	CRR073301	Leaf 2	8.197
	CRR073302	Leaf 3	3.113
	CRR073303	Juvenile bud 1	3.780
	CRR073304	Juvenile bud 2	1.281
	CRR073305	Juvenile bud 3	4.351
	CRR073306	Third green 1	0.708
	CRR073307	Third green 2	0.841
	CRR073308	Third green 3	0.880
	CRR073309	Second white 1	0.628
	CRR073310	Second white 2	0.449
	CRR073311	Second white 3	0.651
	CRR073312	Silver flowering 1	0.495
	CRR073313	Silver flowering 2	0.459
	CRR073314	Silver flowering 3	0.592
	CRR073315	Gold flowering 1	2.179
	CRR073316	Gold flowering 2	3.575
	CRR073317	Gold flowering 3	1.200
	CRR073318	Tawny withering 1	7.935
	CRR073319	Tawny withering 2	17.461
	CRR073320	Tawny withering 3	9.045