Gene detail

Detail information of GWHGAAZE030844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795754.1	0	PREDICTED: putative receptor-like protein kinase At1g80870 [Nicotiana sylvestris]
COG	YP_001958461.1	2E-19	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SAH3\|Y1887_ARATH	0	Putative receptor-like protein kinase At1g80870
trEMBL	tr\|A0A068TPU2\|A0A068TPU2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98236.1}
TAIR10	AT1G80870.1	1E-175	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49262314	49264353	-
GWHAAZE00000009	mRNA	49262314	49264353	-
GWHAAZE00000009	exon	49263450	49264353	-
GWHAAZE00000009	exon	49262314	49263389	-
GWHAAZE00000009	CDS	49263450	49264353	-
GWHAAZE00000009	CDS	49262314	49263389	-

Transcript Sequence
>GWHTAAZE030878 ATCACCACCTTTGCCTCCTCTGTTATCCTCTTCGCCATTATCTACTTCCTCTATTACCTATATTACTCCCTCATCCACCGCTCTCGCACTAGCCCTTACGATTCCTCTTCCCCCTTCGTCAACCTCCACAAATTCTCTTACAGAGACCTCAAATCCGCCACTAACGGATTTAATGAAGCTAATTCCATCGGAAAGGGAGGCTCCGGCACCGTTTACCGTGGTATTCTTCACGACGGTAAATTAGTGGCCATCAAGTTACTCGACTCAGCCTCGTTACAAACGGAAAGAGAGTTTCAAAACGAGTTACAGATACTCGGTGGATTGAATTTCAAGTCTCCTTTTGTTGTTTCTTTATTAGGTTATTGTGTTGACAAGAGGAAGAGATTGGTTGTTTACGAGTACATGCCCAATCGTAGTTTGCAAGAGTCTCTGTTTTCGGACTCCAATCATTTCAATTGGCAGAGAAGGTTCGACAACATTCTTGATGTTGCCAGAGCTCTTGAGTTTTTGCATCTCGAATGTGATCCCCCGGTTATTCACGGGGACGTTAAGCCGAGCAATGTGTTGCTCGATTCCGAGTACAGGGCCAAGTTATCGGATTTTGGTTTGTCTAGGTTCAAGATCGAGGGTGAATTTGGGGTTGATTTGTTCAGCCAGGAGCTTTCCGGGAATTTAGCAGTCACCGGAGGGGAAACTCCGGTGATTGGGACTCCGGTGGAGAGTGTTAGCGAGGTGGACTTTGCTCTAGCTCTGCAAGCCTCCTCTTCTTCAAAAAATAGTAGAGTGCGCCAAAATGTAGGGGGTTTAAATTTAAACTTGAATTCTTTACATTTTAATAGTACCTTCTTCAACGAGGATGATAAGAGTGGAGAAGCGAAGGGGAAGGAGGTGAAGGCGATTGAAAATAGTAAAGAATTGAACTTGAATGCTGCTTTGGCTGTTGATGATACAGTTTGTAAAAAGCAATGGGGTAAGGATTGGTGGTGGAAACAGGATGGGAGTGGTGAATTATGTAGCAAAGATTATGTAATGGAGTGGATTGGGAGCCAAATTTGCCCATCTGCCAACCCTGATTGGGATGAAGGAAAAAAGATTTCTCCTGATAAAACCAATATGGAAAATTCAACCAGGGGAGGTAGATTTGAAGACTCAAGTGAACCCCAGATCCAAAAACCAGGACTTGAGGAACTAGAGAAGGATGAACCGAGGGCCCAAAAAACCCGAGACAAGAAGCACAGGAAGATGCAAGAATGGTGGAAAGAAGAGCATCTTGATGAACTCAGCAAGAAGAGTAGTAGAAAGCTAAAAAAGCTCGAAACCAAGTGCAAGAAAAGGTTCAAAATGCCACATTTCGATTTGGGTAAACGGTTTCGCTTTAGGAGGAGAAGAAAATTCTTGCAGCAGAACCAAAATGAAACCGATCCCAATATGGAGTTCAGTTTCAGAAAAGGGTGGAGGAGAAAGAATGCCCAATCCGTAGGCAGTGACATGTGGAGTGGAGATCTTTTTAGCCGGGAACTAAGCAGTACAACGAGCATGAGGGGGACTCTTTGTTATATTGCACCAGAATACGGGGGTTGTGGATACTTGATGGAGAAGGCTGACATTTACAGCCTAGGGGTTTTGATCCTTGTGATAGTGTCTGGTAGAAGGCCATTACACGTTCTTTCTTCGCCTATGAAGCTGGAGAAAGCAAACTTGATAAGCTGGTGTAGGCATTTGGCTCAAGCTGGGGATATTTTGGAACTTGTAGATGAGAGATTGAGAGACGAGTACAATAAAGAGCAGGCAAGCTTGTGTATCAACTTGGCACTTGCTTGCTTACAAAAAATGCCCGAATTGCGACCTGATATTGGGGATATTGTTAAGATTTTGAAAGGGGAGATGGATCTTCCAGCACACCCATTCGAGTTTTCTCCTTCTCCGCCTTCCAAATTATTTAGCAGGTCAAGGAGAAAACACAAGGCCAATGGGGAATAG

Network for GWHGAAZE030844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	58	206	3.70E-28
PF00069.26	Pkinase	508	622	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.061
	SRR3591706	second leaf	2.074
	SRR3591707	mature leaf	0.465
	SRR3591708	Shoot apex	15.100
	SRR3591709	Stem	15.054
	SRR3591710	White floral bud	1.428
	SRR3591711	White flower	1.672
	SRR3591712	Green floral bud	2.266
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	11.154
	SRR8316896	Juvenile bud stage	7.574
	SRR8316897	Juvenile bud stage	3.416
	SRR8316894	Third green stage	2.560
	SRR8316900	Third green stage	3.859
	SRR8316901	Third green stage	4.846
	SRR8316898	Complete white stage	0.097
	SRR8316899	Complete white stage	6.285
	SRR8316903	Complete white stage	0.512
	SRR8316902	Silver flowering stage	0.018
	SRR8316904	Silver flowering stage	0.035
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.081
	SRR6706287	Light intensity 50%	3.726
	SRR6706288	Light intensity 20%	3.386
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.565
	CNS0095593	Slightly white alabastrum(diploid) 2	8.225
	CNS0095594	Slightly white alabastrum(diploid) 3	6.980
	CNS0095595	Whole white alabastrum(diploid) 2	6.221
	CNS0095596	Whole white alabastrum(diploid) 3	2.899
	CNS0095597	Whole white alabastrum(diploid) 4	5.342
	CNS0095598	Silvery flower (diploied) 1	13.875
	CNS0095599	Silvery flower (diploied) 2	11.139
	CNS0095600	Silvery flower (diploied) 3	3.295
	CNS0095601	Golden flower (diploid) 1	7.089
	CNS0095602	Golden flower (diploid) 2	4.344
	CNS0095603	Golden flower (diploid) 3	5.405
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.288
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.906
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.645
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.311
	CNS0095610	Silvery flower (tetraploid) 1	0.052
	CNS0095611	Silvery flower (tetraploid) 2	0.936
	CNS0095612	Silvery flower (tetraploid) 3	0.393
	CNS0095613	Golden flower (tetraploid) 1	0.046
	CNS0095614	Golden flower (tetraploid) 2	0.094
	CNS0095615	Golden flower (tetraploid) 3	0.079
CRA001975	CRR073297	Stem 1	8.817
	CRR073298	Stem 2	10.987
	CRR073299	Stem 3	12.764
	CRR073300	Leaf 1	9.503
	CRR073301	Leaf 2	11.271
	CRR073302	Leaf 3	7.826
	CRR073303	Juvenile bud 1	5.677
	CRR073304	Juvenile bud 2	1.524
	CRR073305	Juvenile bud 3	14.941
	CRR073306	Third green 1	0.040
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.366
	CRR073309	Second white 1	0.112
	CRR073310	Second white 2	0.137
	CRR073311	Second white 3	0.069
	CRR073312	Silver flowering 1	0.095
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.613
	CRR073316	Gold flowering 2	2.939
	CRR073317	Gold flowering 3	5.043
	CRR073318	Tawny withering 1	19.712
	CRR073319	Tawny withering 2	7.120
	CRR073320	Tawny withering 3	26.084