Gene detail

Detail information of GWHGAAZE030831

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007024815.1	0	Kinase superfamily protein isoform 2 [Theobroma cacao]
COG	YP_001542803.1	2E-27	serine/threonine protein kinase
Swissprot	tr\|O23304\|BLUS1_ARATH	9E-93	Serine/threonine-protein kinase BLUS1
trEMBL	tr\|A0A061GE47\|A0A061GE47_THECC	0	Kinase superfamily protein isoform 2 {ECO:0000313\|EMBL:EOY27437.1}
TAIR10	AT1G79640.2	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49050583	49062802	-
GWHAAZE00000009	mRNA	49050583	49062802	-
GWHAAZE00000009	exon	49062644	49062802	-
GWHAAZE00000009	exon	49059371	49059625	-
GWHAAZE00000009	exon	49057715	49057839	-
GWHAAZE00000009	exon	49057402	49057446	-
GWHAAZE00000009	exon	49057222	49057303	-
GWHAAZE00000009	exon	49057069	49057137	-
GWHAAZE00000009	exon	49056811	49056981	-
GWHAAZE00000009	exon	49056638	49056703	-
GWHAAZE00000009	exon	49055087	49055155	-
GWHAAZE00000009	exon	49054860	49054976	-
GWHAAZE00000009	exon	49054528	49054583	-
GWHAAZE00000009	exon	49054047	49054292	-
GWHAAZE00000009	exon	49051012	49051092	-
GWHAAZE00000009	exon	49050737	49050857	-
GWHAAZE00000009	exon	49050583	49050654	-
GWHAAZE00000009	CDS	49062644	49062802	-
GWHAAZE00000009	CDS	49059371	49059625	-
GWHAAZE00000009	CDS	49057715	49057839	-
GWHAAZE00000009	CDS	49057402	49057446	-
GWHAAZE00000009	CDS	49057222	49057303	-
GWHAAZE00000009	CDS	49057069	49057137	-
GWHAAZE00000009	CDS	49056811	49056981	-
GWHAAZE00000009	CDS	49056638	49056703	-
GWHAAZE00000009	CDS	49055087	49055155	-
GWHAAZE00000009	CDS	49054860	49054976	-
GWHAAZE00000009	CDS	49054528	49054583	-
GWHAAZE00000009	CDS	49054047	49054292	-
GWHAAZE00000009	CDS	49051012	49051092	-
GWHAAZE00000009	CDS	49050737	49050857	-
GWHAAZE00000009	CDS	49050583	49050654	-

Transcript Sequence
>GWHTAAZE030865 ATGGAGAAGAAGAAGTATCCAATTGGAGCGGAGTATTATACACTCTATGAGGAGGTCGGCGAAGGTGTTAGCGCTACGGTTCACCGTGCCCTATGTATCACACACAACGAGATCGTCGCCATCAAAATTATTGATTTCGAACGCAAAAATTCAGATCTGAATAATATATCTCGAGAAGCTCAAACAATGTTCCTGGTTGACCACCCTAATGTTCTAAAGTCACACTGCTCCTTTGTCAGCGAACATAATTTGTGGGTCGTTATGCCTTATATGGCAGGGGGTTCTTGTCTTCATATTTTGAAGGTTGTACGACCAGAGGGTTTTGAGGAGGTTGTTATTGCAACAGTATTGCGTGAGGTATTAAAGGCCTTAGAGTATCTTCATCATCATGGGCACATTCACCGGGACGTCAAAGCTGGAAACATTCTCATCGATTCACGTGGTGCAATCAAGCTTGGAGATTTTGGTGTTTCTGCTTGCTTGTTTGATTCAGGTGACAGGCAACGCACAAGGAATACATTTGTGGGGACCCCTTGCTGGATGGCACCAGAGGTTATGGAGCAAATGCATGGTTATGACTTCAAGGCTGATATATGGTCTTTCGGTATTACTGCTTTGGAACTTGCTCACGGCCATGCTCCTTTCTCCAAGTATCCTCCGATGAAGGTTTTGCTTATGACCTTGCAAAATGCACCCCCTGGCCTTGATTTAGACAGGGACAAGAAGTTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGTTTGGTTAAAGATCCTTCAAAGCGGCCTTCAGCTAAAAGGTTGTTGAAGCATTCCTTCTTCAAACAAGCTAGATCAAGTGATTATATATCACGGAAACTTTTGGAAGGGCTGCCAGCACTTGGTGAGCGTCTTCAGGCACTGAAGAGGAAGGAAGAAGATATGCTTGCACAAAAGAAAATACCAGATGGGCAAAAAGAGGAAATATCACAGAATGAATATAAACGAGGTATTAGTGGCTGGAACTTTAACCTTGAAGACGTTAAGGCTCAAGCTTCCCTGATCCAAGATGATGACTGCATATCTGACAAAGATCAAGGAGGGAAGTCAACTTTTTCTGGGCCTGATATGCATGAAAAACAATCTCTTGAGAGCCAATCTTTGGAAGCTGCAGATATGGAAGATTATAACATACGGAATCAACTTGCTCCACTTTCAGCAGCTGATTCTACCATGGGTAAATATGAAAAATCCGATGATGACATGAGCGTTGCTAGTTCATCGCATGAACAACAAATTTCCCAGAATAATTCTCCTCGTTACGACAATCATGTTGAAAGTATTTTGGTCGGAAAACCTGACATTGAGACCAACGGAAAGTTCTTGGAGGGTATCCCTACAAAGCCTCATCAGAGGAGGGGAAGTTCATCAAGCAACGTCTTTTCCCCCGACACTGCTTTTCCCCCCTGTAAAGGAGATAGCGCCAAGGGAGCACCTACTCCTCCAACAATGGAAGATTCATCTCCTGAAAATGCCTCTAGAACTTCTAAAACACCAGGCAATTTTGTTGAAACAGTAAATAGTACTGATGAACAAGATGAAAAGGTAAAGTGCCAAGTTGTTCAGCAGAAAGGACGTTTCAAAGTCACATCTGAGAGTGTTGATTTAGAGAAGGTGAATTTAGTGGCTCCATCTCCTCTGCTTCAAAAAAGTCATAGCATGCAGGTTCATACTAATCTCATTGACTTGCGCTAA

Network for GWHGAAZE030831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	13	274	4.00E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE20-Fray

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.222
	SRR3591706	second leaf	2.312
	SRR3591707	mature leaf	1.524
	SRR3591708	Shoot apex	0.594
	SRR3591709	Stem	0.546
	SRR3591710	White floral bud	3.755
	SRR3591711	White flower	1.025
	SRR3591712	Green floral bud	14.516
	SRR3591713	Yellow flower	0.362
SRP173429	SRR8316895	Juvenile bud stage	2.146
	SRR8316896	Juvenile bud stage	7.428
	SRR8316897	Juvenile bud stage	2.133
	SRR8316894	Third green stage	4.273
	SRR8316900	Third green stage	12.852
	SRR8316901	Third green stage	14.939
	SRR8316898	Complete white stage	0.399
	SRR8316899	Complete white stage	3.033
	SRR8316903	Complete white stage	1.821
	SRR8316902	Silver flowering stage	0.653
	SRR8316904	Silver flowering stage	0.681
	SRR8316905	Silver flowering stage	0.255
	SRR8316906	Gold flowering stage	0.584
	SRR8316907	Gold flowering stage	1.195
	SRR8316908	Gold flowering stage	0.825
SRP132670	SRR6706286	Control	6.864
	SRR6706287	Light intensity 50%	8.323
	SRR6706288	Light intensity 20%	7.474
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.662
	CNS0095593	Slightly white alabastrum(diploid) 2	4.824
	CNS0095594	Slightly white alabastrum(diploid) 3	6.531
	CNS0095595	Whole white alabastrum(diploid) 2	10.292
	CNS0095596	Whole white alabastrum(diploid) 3	14.012
	CNS0095597	Whole white alabastrum(diploid) 4	13.604
	CNS0095598	Silvery flower (diploied) 1	0.280
	CNS0095599	Silvery flower (diploied) 2	0.753
	CNS0095600	Silvery flower (diploied) 3	0.508
	CNS0095601	Golden flower (diploid) 1	0.599
	CNS0095602	Golden flower (diploid) 2	0.246
	CNS0095603	Golden flower (diploid) 3	0.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.510
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.465
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.326
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.209
	CNS0095610	Silvery flower (tetraploid) 1	0.153
	CNS0095611	Silvery flower (tetraploid) 2	0.332
	CNS0095612	Silvery flower (tetraploid) 3	0.356
	CNS0095613	Golden flower (tetraploid) 1	0.180
	CNS0095614	Golden flower (tetraploid) 2	0.345
	CNS0095615	Golden flower (tetraploid) 3	0.410
CRA001975	CRR073297	Stem 1	4.170
	CRR073298	Stem 2	3.809
	CRR073299	Stem 3	1.479
	CRR073300	Leaf 1	10.099
	CRR073301	Leaf 2	7.862
	CRR073302	Leaf 3	4.218
	CRR073303	Juvenile bud 1	5.241
	CRR073304	Juvenile bud 2	2.220
	CRR073305	Juvenile bud 3	2.131
	CRR073306	Third green 1	0.355
	CRR073307	Third green 2	0.293
	CRR073308	Third green 3	0.259
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	0.062
	CRR073311	Second white 3	0.458
	CRR073312	Silver flowering 1	0.181
	CRR073313	Silver flowering 2	0.462
	CRR073314	Silver flowering 3	0.092
	CRR073315	Gold flowering 1	0.839
	CRR073316	Gold flowering 2	1.001
	CRR073317	Gold flowering 3	0.681
	CRR073318	Tawny withering 1	0.216
	CRR073319	Tawny withering 2	0.627
	CRR073320	Tawny withering 3	0.266