Gene detail

Detail information of GWHGAAZE030825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98274.1	1.9049E-157	unnamed protein product [Coffea canephora]
Swissprot	tr\|P43333\|RU2A_ARATH	1E-123	U2 small nuclear ribonucleoprotein A'
trEMBL	tr\|A0A068TQR7\|A0A068TQR7_COFCA	7E-158	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98274.1}
TAIR10	AT1G09760.1	3E-78	U2 small nuclear ribonucleoprotein A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48925556	48928130	-
GWHAAZE00000009	mRNA	48925556	48928130	-
GWHAAZE00000009	exon	48925556	48925732	-
GWHAAZE00000009	exon	48925879	48925992	-
GWHAAZE00000009	exon	48926231	48926404	-
GWHAAZE00000009	exon	48927321	48927526	-
GWHAAZE00000009	exon	48927623	48927752	-
GWHAAZE00000009	exon	48927874	48927914	-
GWHAAZE00000009	exon	48928049	48928130	-
GWHAAZE00000009	CDS	48928049	48928130	-
GWHAAZE00000009	CDS	48927874	48927914	-
GWHAAZE00000009	CDS	48927623	48927752	-
GWHAAZE00000009	CDS	48927321	48927526	-
GWHAAZE00000009	CDS	48926231	48926404	-
GWHAAZE00000009	CDS	48925879	48925992	-
GWHAAZE00000009	CDS	48925556	48925732	-

Transcript Sequence
>GWHTAAZE030859 ATGGTGAGATTAACGGCTGACCTCATTTGGAAAAGCCCTCACTTCTTCAATGCCCTTCGCGAGCGTGAATTGGATCTTCGAGGCAATAAGATTTCTGTTCTAGAGAACTTGGGTGCTACTGAGGATCAATTTGACTCCATTGATTTGTCTGACAATGAGATTGTTAAGCTTGAAAACTTTCCCCATCTAAGTAGACTTGGCACTTTGTTACTAAACAACAATAGAATTACCCGTATCAACCCTAAAATTGGAGAGTTCTTGCCTAAACTTCACACTTTAGTCCTCACTAACAATCGGCTCGTTAATTTGGTTGAGATCGATCCACTTGCTTCCTTCCCAAAGCTGCAGTTCCTTAGTCTGCTCGATAATAATATAACAAAGAAGCCCAATTACCGCTTATATGTCATCCACAAATTGAAATCACTGCGTTTGCTAGATTTCAAGAAAGTCAAACAGAAGGAGCGAATTGAGGCAGCTAACATGTTTGCTTCGCAAGAAGCTGAAGAGGAAGCTAAAATAGAATCTGTAAAAACATTTGTACCTGGTGAGGTTCCTAGTACTGAAGATATTCCAAGTGAGGAACAAACTCCTAAAACAGTTGCTCCTACACCTGAGCAAATTACAGCTATCAAGGCTGCCATCGTCAATTCTCAGACTCTTGAAGAGGTAGCAAGGCTTGAACAGGTGATCCTTTATCTTAGCCGAAACAAGACTATTAAATGCTTTCCTCTTTTTAAAAATTTAACTGCATTAAAGTCAGGCCAGCTTCCGGCAGATTTAAATATCACTGGTCTTGATGGTTTGACAAACAATGAAAATGTCAAGGAGGACAAAATGGTCACAGATGGTGAAACTGAAATTAATGACACACCAAAAGATGCTGATCCTGCACAGAAAGATGACAGTCCTGCGGAAATGCAGCAG

Network for GWHGAAZE030825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14580.7	LRR_9	1	172	1.80E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11092	SNRPA1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.593
	SRR3591706	second leaf	47.198
	SRR3591707	mature leaf	31.904
	SRR3591708	Shoot apex	96.091
	SRR3591709	Stem	48.023
	SRR3591710	White floral bud	75.101
	SRR3591711	White flower	93.296
	SRR3591712	Green floral bud	81.468
	SRR3591713	Yellow flower	67.955
SRP173429	SRR8316895	Juvenile bud stage	45.123
	SRR8316896	Juvenile bud stage	50.672
	SRR8316897	Juvenile bud stage	30.320
	SRR8316894	Third green stage	22.380
	SRR8316900	Third green stage	67.107
	SRR8316901	Third green stage	59.820
	SRR8316898	Complete white stage	26.179
	SRR8316899	Complete white stage	81.238
	SRR8316903	Complete white stage	35.859
	SRR8316902	Silver flowering stage	31.203
	SRR8316904	Silver flowering stage	35.060
	SRR8316905	Silver flowering stage	18.506
	SRR8316906	Gold flowering stage	69.020
	SRR8316907	Gold flowering stage	61.539
	SRR8316908	Gold flowering stage	61.345
SRP132670	SRR6706286	Control	59.421
	SRR6706287	Light intensity 50%	60.002
	SRR6706288	Light intensity 20%	65.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.715
	CNS0095593	Slightly white alabastrum(diploid) 2	60.541
	CNS0095594	Slightly white alabastrum(diploid) 3	47.982
	CNS0095595	Whole white alabastrum(diploid) 2	50.339
	CNS0095596	Whole white alabastrum(diploid) 3	49.125
	CNS0095597	Whole white alabastrum(diploid) 4	42.799
	CNS0095598	Silvery flower (diploied) 1	60.876
	CNS0095599	Silvery flower (diploied) 2	44.836
	CNS0095600	Silvery flower (diploied) 3	51.217
	CNS0095601	Golden flower (diploid) 1	43.931
	CNS0095602	Golden flower (diploid) 2	52.329
	CNS0095603	Golden flower (diploid) 3	45.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.994
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.698
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.894
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.531
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.583
	CNS0095610	Silvery flower (tetraploid) 1	53.938
	CNS0095611	Silvery flower (tetraploid) 2	53.818
	CNS0095612	Silvery flower (tetraploid) 3	47.157
	CNS0095613	Golden flower (tetraploid) 1	36.511
	CNS0095614	Golden flower (tetraploid) 2	50.117
	CNS0095615	Golden flower (tetraploid) 3	45.392
CRA001975	CRR073297	Stem 1	43.765
	CRR073298	Stem 2	38.914
	CRR073299	Stem 3	35.980
	CRR073300	Leaf 1	40.011
	CRR073301	Leaf 2	29.840
	CRR073302	Leaf 3	32.151
	CRR073303	Juvenile bud 1	28.312
	CRR073304	Juvenile bud 2	23.983
	CRR073305	Juvenile bud 3	30.598
	CRR073306	Third green 1	12.280
	CRR073307	Third green 2	10.103
	CRR073308	Third green 3	11.420
	CRR073309	Second white 1	15.492
	CRR073310	Second white 2	16.657
	CRR073311	Second white 3	14.114
	CRR073312	Silver flowering 1	12.189
	CRR073313	Silver flowering 2	9.586
	CRR073314	Silver flowering 3	12.614
	CRR073315	Gold flowering 1	24.420
	CRR073316	Gold flowering 2	28.557
	CRR073317	Gold flowering 3	18.611
	CRR073318	Tawny withering 1	30.448
	CRR073319	Tawny withering 2	34.691
	CRR073320	Tawny withering 3	33.281