Gene detail

Detail information of GWHGAAZE030818

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009792195.1	PREDICTED: calnexin homolog 1-like [Nicotiana sylvestris]
Swissprot	tr\|P29402\|CALX1_ARATH	Calnexin homolog 1 (Precursor)
trEMBL	tr\|A0A077DBL4\|A0A077DBL4_TOBAC	Calnexin-like protein {ECO:0000313\|EMBL:AIL30503.1}
TAIR10	AT5G61790.1	calnexin 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48857664	48860599	+
GWHAAZE00000009	mRNA	48857664	48860599	+
GWHAAZE00000009	exon	48857664	48857750	+
GWHAAZE00000009	exon	48857882	48857951	+
GWHAAZE00000009	exon	48858885	48860014	+
GWHAAZE00000009	exon	48860101	48860172	+
GWHAAZE00000009	exon	48860257	48860370	+
GWHAAZE00000009	exon	48860462	48860599	+
GWHAAZE00000009	CDS	48857664	48857750	+
GWHAAZE00000009	CDS	48857882	48857951	+
GWHAAZE00000009	CDS	48858885	48860014	+
GWHAAZE00000009	CDS	48860101	48860172	+
GWHAAZE00000009	CDS	48860257	48860370	+
GWHAAZE00000009	CDS	48860462	48860599	+

Transcript Sequence
>GWHTAAZE030852 ATGGAGAAAGCCAAACGGAGCATCTGTTTGCAGTTGCTAATGGTCGCTGCTTGCTTTGCTTCCCAGCTCTACGCCTCTTCTGATTCGTACTTTTACGAGTCATTTGACGAAGCGTTTGACGGACGTTGGATTGTGTCTGAGAAGGATGATTATCAAGGTGTGTGGAAACATGCAAAGAGTGAAGGACACGATGACTATGGGCTTCTTGTGAGCGAGAAAGCTAGGAAGTATGCAATCGTCAAGGAGCTTGATGAACCAGTAGATCTGAAGGATGGATCTGTTGTCCTCCAATTTGAAACCCGCCTCCAGAATGGACTTGAATGTGGTGGTGCATACCTTAAATATCTCAGACCCCAGGACGCTGGGTGGTTGCCCAAGGGATTTGACAACGAGTCTCCCTACTCTATAATGTTTGGACCCGACAAATGTGGTCTCACCAATAAGGTTCACTTCATCTTAAAGCATAAGAACCCCAAGAGCGGAGAGTACATTGAGCACCACCTCAAGGTCCCACCTAGTGTGCCATCTGACAAACTGACGCATGTGTACACTGCCATTTTGACACCAGATAATGAAGTTCGAATCTTGGTCGATGGGGAAGAGAAGAAGAAAGCTAACTTTTTATCCGCTGATGACTTTGAGCCAGCCCTAATTCCCGAAAAAACTATTCCAGACCCAGATGATAAGAAGCCTGAGGACTGGGATGAGAGGGCAAAAATTCCGGACCTAGATGCAAAGAAACCAGATGATTGGGATGAGGATGCACCCATTGAAATTGAAGATGAGGAAGCTAAGAAACCTGAAGGATGGTTAGATGATGAGCCTGAAGAAATTGACGATCCCGAGGCAACAAAACCAGAGGATTGGGATGATGATGAGGATGGTTTATGGGAGGCCCCAAAGATCGACAACCCTAAGTGCGAGAGCGCACCTGGTTGTGGGGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCTTATAAGGGAAAATGGCATGCTCCCCTTATCGACAACCCCAATTACAAGGGTATTTGGAAGCCTCAGCAAATTCCAAATCCAAGCTACTTTGAACTTGAGAAACCTGACTTTGAGCCTATTGCAGCTATTGGCATTGAAATTTGGACAATGCAAGATGGCATATTGTTTGACAATATATTGATAGAGAGTGATGAGAAAGTTGCGGAATCATACAGGGATACAAAATGGAAGCCCAAGTTTGAAGTAGAGAAAGAAAAACTAAAGGCTGAGGAAGAAGCCTCTAGTCTTTCAGAGGGTCTCAAAGGTTTCCAGAAGGCGGTGTTTGACCTGTTTTACAAGGTTGCAGACATTCCTTTCCTGAGTGAATACAAGCTCAAAATTTTGGATCTCATCGAAAAAGCAGAGAAACAACCGAGCATCACAATCGGGGTTCTTGTCTCCATTGTAGTTGTTATTTTCACCGTGTTGTTGAAGGCCATATTTAGTGGAAAGAAGCCAGCAAAAGTTACCGAAGAAACAAAGAAGGAAGATGTAGCCGAGACATCAAACAATCAAGGAAGCAGTGAAGAGAAGGAAGAAGATAATGGAGAAGATGCTAGCGCTCCTGTTCGTAGAAAGACCAGGCGTGAGAATTAG

Network for GWHGAAZE030818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0322

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00262.19	Calreticulin	31	386	1.10E-141

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08054	CANX	Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145
		Antigen processing and presentation	map04612
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005509	molecular_function	calcium ion binding
GO:0051082	molecular_function	unfolded protein binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	278.635
	SRR3591706	second leaf	146.808
	SRR3591707	mature leaf	159.064
	SRR3591708	Shoot apex	163.920
	SRR3591709	Stem	175.064
	SRR3591710	White floral bud	229.840
	SRR3591711	White flower	199.699
	SRR3591712	Green floral bud	227.107
	SRR3591713	Yellow flower	709.154
SRP173429	SRR8316895	Juvenile bud stage	135.133
	SRR8316896	Juvenile bud stage	196.736
	SRR8316897	Juvenile bud stage	93.398
	SRR8316894	Third green stage	87.123
	SRR8316900	Third green stage	283.953
	SRR8316901	Third green stage	257.979
	SRR8316898	Complete white stage	124.868
	SRR8316899	Complete white stage	193.246
	SRR8316903	Complete white stage	194.859
	SRR8316902	Silver flowering stage	136.178
	SRR8316904	Silver flowering stage	197.964
	SRR8316905	Silver flowering stage	112.976
	SRR8316906	Gold flowering stage	351.445
	SRR8316907	Gold flowering stage	348.263
	SRR8316908	Gold flowering stage	285.350
SRP132670	SRR6706286	Control	158.340
	SRR6706287	Light intensity 50%	156.182
	SRR6706288	Light intensity 20%	149.899
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	175.483
	CNS0095593	Slightly white alabastrum(diploid) 2	150.870
	CNS0095594	Slightly white alabastrum(diploid) 3	202.954
	CNS0095595	Whole white alabastrum(diploid) 2	157.781
	CNS0095596	Whole white alabastrum(diploid) 3	160.572
	CNS0095597	Whole white alabastrum(diploid) 4	128.394
	CNS0095598	Silvery flower (diploied) 1	204.794
	CNS0095599	Silvery flower (diploied) 2	129.771
	CNS0095600	Silvery flower (diploied) 3	215.558
	CNS0095601	Golden flower (diploid) 1	81.343
	CNS0095602	Golden flower (diploid) 2	464.899
	CNS0095603	Golden flower (diploid) 3	459.448
	CNS0095604	Slightly white alabastrum(tetraploid) 1	162.497
	CNS0095605	Slightly white alabastrum(tetraploid) 2	157.557
	CNS0095606	Slightly white alabastrum(tetraploid) 3	199.720
	CNS0095607	Whole white alabastrum(tetraploid) 1	135.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	102.469
	CNS0095609	Whole white alabastrum(tetraploid) 3	254.161
	CNS0095610	Silvery flower (tetraploid) 1	223.009
	CNS0095611	Silvery flower (tetraploid) 2	150.172
	CNS0095612	Silvery flower (tetraploid) 3	110.198
	CNS0095613	Golden flower (tetraploid) 1	142.411
	CNS0095614	Golden flower (tetraploid) 2	203.085
	CNS0095615	Golden flower (tetraploid) 3	332.433
CRA001975	CRR073297	Stem 1	155.834
	CRR073298	Stem 2	147.730
	CRR073299	Stem 3	143.221
	CRR073300	Leaf 1	170.755
	CRR073301	Leaf 2	148.308
	CRR073302	Leaf 3	151.982
	CRR073303	Juvenile bud 1	140.477
	CRR073304	Juvenile bud 2	164.638
	CRR073305	Juvenile bud 3	139.578
	CRR073306	Third green 1	53.049
	CRR073307	Third green 2	65.261
	CRR073308	Third green 3	89.726
	CRR073309	Second white 1	68.557
	CRR073310	Second white 2	70.572
	CRR073311	Second white 3	82.367
	CRR073312	Silver flowering 1	247.603
	CRR073313	Silver flowering 2	304.909
	CRR073314	Silver flowering 3	322.750
	CRR073315	Gold flowering 1	51.036
	CRR073316	Gold flowering 2	65.212
	CRR073317	Gold flowering 3	63.764
	CRR073318	Tawny withering 1	119.619
	CRR073319	Tawny withering 2	83.262
	CRR073320	Tawny withering 3	152.129