Gene detail

Detail information of GWHGAAZE030815

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009596907.1	5.6442E-174	PREDICTED: carbonyl reductase [NADPH] 1-like isoform X1 [Nicotiana tomentosiformis]
COG	YP_008149897.1	2E-42	hypothetical protein SCE1572_17400
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	1E-50	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A068TSH1\|A0A068TSH1_COFCA	1E-173	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98293.1}
TAIR10	AT5G51030.1	2E-110	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48819818	48826095	-
GWHAAZE00000009	mRNA	48819818	48826095	-
GWHAAZE00000009	exon	48826004	48826095	-
GWHAAZE00000009	exon	48822102	48822360	-
GWHAAZE00000009	exon	48821463	48821673	-
GWHAAZE00000009	exon	48821070	48821155	-
GWHAAZE00000009	exon	48820570	48820916	-
GWHAAZE00000009	exon	48819818	48819947	-
GWHAAZE00000009	CDS	48826004	48826095	-
GWHAAZE00000009	CDS	48822102	48822360	-
GWHAAZE00000009	CDS	48821463	48821673	-
GWHAAZE00000009	CDS	48821070	48821155	-
GWHAAZE00000009	CDS	48820570	48820916	-
GWHAAZE00000009	CDS	48819818	48819947	-

Transcript Sequence
>GWHTAAZE030849 ATGGAAAAAAAGGAGAGGGCTAAGGAGCGAAGAGAGAAGAGACGCCAACAGATCTCTCTCCTCCGTACCATTCCTTATTCCGATCATCAAAGGTGGTGGTCTTCAGAGACTATTGCTGTGGTGACTGGCGCGAACAGAGGGATTGGATTTGAGATTGCGCACCAACTTGCAATGCATGGGTTGACAGTTATTCTAACGTCAAGAGAGACAGGTGTTGGTGAAGAAGCAGCAAAGGTCTTACAAGAAGGAGGCTTGAACGTGGTTGTCCATCAACTGGATGTTGTTGATCACGATTCTATTAAAACATTTACTGATTGGGTAAAAGAAAACTACGGTGGTGTTGATATTCTGATAAACAATGCGGGTGTTAATTTTAATTTTGGAAGTGACAATTCTGTTGAACATGCTGAAGAGGTTATCAACACCAACTATTATGGGACTAAAAATATGGTTAAAGCTACGATCCCTTTAATGAGGCCTTCCGCCGCAGGTGCTCGCATTGTTAGTGTCAGCTCACGGTTGGGGAAATTAAATGGCAGGCAAAATGTAATTAATAGCTTTGGGAAAATGAAATGTGTAAGCTGGATGAATGTGCTTACACCTTATGTCCCACCATGTGGTACACCTGGCCACTTGTCTTCACATGAGAAACTTAAAGACGTAGCATTGAGAGAACAACTAGAGGATGTGAACTTGCTATCGGAGGAACTGATTGATAAGACTGTGAATATGTTTTTAGAACAAGTAAGAGATGGAACATGGAAATCTGGGGGATGGCCCGAAACACTCACAGACTATTCGATATCGAAACTCGCTGTTAATGCTTACACAAGGCTAATGGCAAGGGAACTTGCAGACCGACCCGATGGTGAGAAAATATATATCAATTGCTATTGCCCTGGTTGGGTAAAGACCGCCATGACTAGTTGGGCAGGCCATATTTCACCCGAGGAAGCAGCTGACACTGCAGTTTGGCTTGCCCTTCTCCCGGACCAACCAAAAGTTTCAGAAGTCAAAGATTTCGGTAATAGAAGATTGACTGGACATGAAATGCCTATAGGCATCAGCCACTTTCCGGTCCACGATGACGATATCGTCACCGAGCAATGCATAGTCCTGAAACAG

Network for GWHGAAZE030815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	38	182	2.10E-31
PF00106.26	adh_short	263	309	4.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00079	CBR1	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Folate biosynthesis	map00790
		Metabolism of xenobiotics by cytochrome P450	map00980

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.370
	SRR3591706	second leaf	0.251
	SRR3591707	mature leaf	0.347
	SRR3591708	Shoot apex	1.780
	SRR3591709	Stem	0.241
	SRR3591710	White floral bud	17.895
	SRR3591711	White flower	0.676
	SRR3591712	Green floral bud	55.586
	SRR3591713	Yellow flower	0.232
SRP173429	SRR8316895	Juvenile bud stage	0.243
	SRR8316896	Juvenile bud stage	10.935
	SRR8316897	Juvenile bud stage	12.460
	SRR8316894	Third green stage	10.161
	SRR8316900	Third green stage	65.608
	SRR8316901	Third green stage	71.080
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.251
	SRR8316903	Complete white stage	0.326
	SRR8316902	Silver flowering stage	0.114
	SRR8316904	Silver flowering stage	0.607
	SRR8316905	Silver flowering stage	0.026
	SRR8316906	Gold flowering stage	0.204
	SRR8316907	Gold flowering stage	0.148
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	46.375
	SRR6706287	Light intensity 50%	39.839
	SRR6706288	Light intensity 20%	34.365
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.405
	CNS0095593	Slightly white alabastrum(diploid) 2	35.172
	CNS0095594	Slightly white alabastrum(diploid) 3	35.103
	CNS0095595	Whole white alabastrum(diploid) 2	70.840
	CNS0095596	Whole white alabastrum(diploid) 3	91.781
	CNS0095597	Whole white alabastrum(diploid) 4	66.009
	CNS0095598	Silvery flower (diploied) 1	0.310
	CNS0095599	Silvery flower (diploied) 2	1.619
	CNS0095600	Silvery flower (diploied) 3	0.674
	CNS0095601	Golden flower (diploid) 1	0.789
	CNS0095602	Golden flower (diploid) 2	0.385
	CNS0095603	Golden flower (diploid) 3	0.255
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.413
	CNS0095605	Slightly white alabastrum(tetraploid) 2	83.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	126.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	129.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	93.602
	CNS0095610	Silvery flower (tetraploid) 1	0.491
	CNS0095611	Silvery flower (tetraploid) 2	0.733
	CNS0095612	Silvery flower (tetraploid) 3	2.056
	CNS0095613	Golden flower (tetraploid) 1	0.456
	CNS0095614	Golden flower (tetraploid) 2	0.562
	CNS0095615	Golden flower (tetraploid) 3	0.756
CRA001975	CRR073297	Stem 1	6.535
	CRR073298	Stem 2	9.999
	CRR073299	Stem 3	1.849
	CRR073300	Leaf 1	38.091
	CRR073301	Leaf 2	29.242
	CRR073302	Leaf 3	18.693
	CRR073303	Juvenile bud 1	19.069
	CRR073304	Juvenile bud 2	19.454
	CRR073305	Juvenile bud 3	0.192
	CRR073306	Third green 1	2.183
	CRR073307	Third green 2	2.704
	CRR073308	Third green 3	1.571
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.773
	CRR073311	Second white 3	0.469
	CRR073312	Silver flowering 1	1.231
	CRR073313	Silver flowering 2	0.636
	CRR073314	Silver flowering 3	0.784
	CRR073315	Gold flowering 1	0.990
	CRR073316	Gold flowering 2	0.621
	CRR073317	Gold flowering 3	0.703
	CRR073318	Tawny withering 1	2.755
	CRR073319	Tawny withering 2	1.596
	CRR073320	Tawny withering 3	1.536