Gene detail

Detail information of GWHGAAZE030809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADX97316.1	1.0181E-173	LEAFY-like protein [Mangifera indica]
Swissprot	tr\|O04064\|FLLH_POPTR	3E-166	Floricaula/leafy homolog
trEMBL	tr\|F1CWA0\|F1CWA0_MANIN	4E-174	LEAFY-like protein {ECO:0000313\|EMBL:ADX97316.1}
TAIR10	AT5G61850.1	8E-67	floral meristem identity control protein LEAFY (LFY)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48761705	48767349	-
GWHAAZE00000009	mRNA	48761705	48767349	-
GWHAAZE00000009	exon	48761705	48762196	-
GWHAAZE00000009	exon	48765907	48766167	-
GWHAAZE00000009	exon	48766246	48766262	-
GWHAAZE00000009	exon	48766920	48767349	-
GWHAAZE00000009	CDS	48766920	48767349	-
GWHAAZE00000009	CDS	48766246	48766262	-
GWHAAZE00000009	CDS	48765907	48766167	-
GWHAAZE00000009	CDS	48761888	48762196	-
GWHAAZE00000009	three_prime_UTR	48761705	48761887	-

Transcript Sequence
>GWHTAAZE030843 ATGGATCCAGACGCATTCTCGGCAAGTTTGTTCAAGTGGGACCCAAGAGGAGCCATGCCACCACCCAACCGCCTGTTTGAGGCTGTGGCACCACAGCCACCGGTGTCTCAGTACTCGCTGCTCCGACCAAGAGAGGTGGGTGGACTGGAGGAATTATTCCAAGCTTATGGGGTAAGGTACTATACAGCGGCGAAGATGGCGGAGCTTGGATTCACTGCTAACACACTCTTGGATATGAAGGATGAGGAGCTTGATGATATGATGAACAGCCTCTCCCAAATTTTCCGTTGGGACCTTCTTGTTGGGGAGAGGTATGGCATCAAAGCTGCTGTTAGGGCCGAGCGCCGCCGCCTCGAGGATGAAGAAGCGCGCAGGCGCCACTTCCTCTTGGCTGACACTACCAACACCCTCGACGCACTGTCGCAAGAAGGGCTATCAGAGGAGCCACGCTGCCAGAGGAAGGGGGGGAGGGCTAGAATGGCATCATTGGAGGACCGTGATGACGAGACCGAAGGAGCTGAGGATGACGAAGGTGCCTGCGGTGAGCGGCAAAGGGAGCACCCCTTCATAGTGACAGAGCCGGGGGAGGTGGCGCGTGGGAAAAAGAATGGGTTAGATTACCTGTTCCATCTATACGAGCAGTGCAGGGAGTTCTTGGTCCAAGTCCAGAATATTGCTAAGGAGAGAGGTGAAAAATGCCCCACTAAGGTGACAAACCAGGTATTTAGGTACGCAAAGAAGGCAGGTGCGAGCTACATCAATAAGCCGAAAATGCGACACTACGTGCACTGCTATGCGCTGCACTGCCTCGAGGAGGAGGCATCAAACGCTCTGAGGAGAGCATTCAAGGAGAGAGGAGAGAACGTAGGGGCGTGGAGGCAAGCATGCTACAAGCCCCTTGTGGCTATAGCAGGCTCGTCAGGGTTGGGACATAGACGCCATTTTCAGCACCCATCCTCGGCTCTCTATTTGGTACGTCCCCACCAAGCTTCGTCAGCTCTGCCACACCGAACGTAGCAACACTACATCTTCCAGCTCCATCACTGGTGGGGCTGATCACTTGCCGTTCTGAATATGGGTTTTGTCTTATGTTTGCCTGTTTCTAGAGCCTATTATTAAAATGTAACGTATGCCTTCATTCTAGAGTTCAAGATTGAGAGCATGTAGGAACTCGTTTATTTATGTATGTGTTGATTGCTT

Network for GWHGAAZE030809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01698.17	SAM_LFY	45	122	5.50E-45
PF17538.3	C_LFY_FLO	178	325	6.60E-86

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LFY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.095
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.172
	SRR3591709	Stem	0.126
	SRR3591710	White floral bud	6.260
	SRR3591711	White flower	10.189
	SRR3591712	Green floral bud	3.242
	SRR3591713	Yellow flower	0.391
SRP173429	SRR8316895	Juvenile bud stage	3.150
	SRR8316896	Juvenile bud stage	1.324
	SRR8316897	Juvenile bud stage	0.899
	SRR8316894	Third green stage	0.559
	SRR8316900	Third green stage	0.457
	SRR8316901	Third green stage	0.660
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.493
	SRR8316903	Complete white stage	0.405
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.186
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.061
	SRR8316907	Gold flowering stage	0.153
	SRR8316908	Gold flowering stage	0.395
SRP132670	SRR6706286	Control	1.663
	SRR6706287	Light intensity 50%	2.491
	SRR6706288	Light intensity 20%	2.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.552
	CNS0095593	Slightly white alabastrum(diploid) 2	2.137
	CNS0095594	Slightly white alabastrum(diploid) 3	1.283
	CNS0095595	Whole white alabastrum(diploid) 2	1.770
	CNS0095596	Whole white alabastrum(diploid) 3	0.224
	CNS0095597	Whole white alabastrum(diploid) 4	0.804
	CNS0095598	Silvery flower (diploied) 1	7.947
	CNS0095599	Silvery flower (diploied) 2	6.671
	CNS0095600	Silvery flower (diploied) 3	0.756
	CNS0095601	Golden flower (diploid) 1	11.173
	CNS0095602	Golden flower (diploid) 2	2.837
	CNS0095603	Golden flower (diploid) 3	3.077
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.956
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.703
	CNS0095610	Silvery flower (tetraploid) 1	1.203
	CNS0095611	Silvery flower (tetraploid) 2	3.019
	CNS0095612	Silvery flower (tetraploid) 3	0.756
	CNS0095613	Golden flower (tetraploid) 1	0.706
	CNS0095614	Golden flower (tetraploid) 2	0.903
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	2.336
	CRR073298	Stem 2	1.321
	CRR073299	Stem 3	3.663
	CRR073300	Leaf 1	0.898
	CRR073301	Leaf 2	0.218
	CRR073302	Leaf 3	0.300
	CRR073303	Juvenile bud 1	0.117
	CRR073304	Juvenile bud 2	0.199
	CRR073305	Juvenile bud 3	0.202
	CRR073306	Third green 1	0.034
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.077
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.165
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.134
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.033
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.198
	CRR073318	Tawny withering 1	0.095
	CRR073319	Tawny withering 2	0.060
	CRR073320	Tawny withering 3	0.033