Gene detail

Detail information of GWHGAAZE030801

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009773258.1	0	PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Nicotiana sylvestris]
COG	YP_007111334.1	5E-98	Mg-protoporphyrin IX methyltransferase
Swissprot	tr\|Q9SW18\|CHLM_ARATH	1E-154	Magnesium protoporphyrin IX methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|Q9MUE2\|Q9MUE2_TOBAC	0	S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase {ECO:0000313\|EMBL:AAF70243.1}
TAIR10	AT4G25080.5	3E-114	magnesium-protoporphyrin IX methyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48647496	48649184	+
GWHAAZE00000009	mRNA	48647496	48649184	+
GWHAAZE00000009	exon	48647496	48648059	+
GWHAAZE00000009	exon	48648777	48649184	+
GWHAAZE00000009	CDS	48647496	48648059	+
GWHAAZE00000009	CDS	48648777	48649184	+

Transcript Sequence
>GWHTAAZE030835 ATGGCGTACTCGTCGGCGATATTATCTCCGGCCTGTATCCATACTAGCCCTAAATTATCTCCAAAACAATACAAACCAAACCGCCAAACACTCATCGTATCCGCCATTCCACCACTCTCCACTGCATCCGACCTCTCCGCCATCACCTCTCCACTCGACAGCACCACACTGGCTGTCATCGGCGGAGGATCGGTCGCCGCCCTAGCAGCCGTGCTGTCGATAGCAGACCCCGAGATGAGGAGGCGGAGCCAGGCCGCTGAAGTTGGGGGAGGGGACAAGGAGGTGGTGAGGGAGTATTTTAATAATAATGGATTCGAGAGGTGGAAGAAGATTTACGGAGATACTGATGAGGTGAATAGGGTGCAGTTGGATATAAGGATTGGACATGCGAAGACTGTGGAGAGTGTGATGAAAATGTTGAAGGATGAAGGGAGTCTGGAAGGTGTTACTGTATGTGATGCAGGCTGTGGGACCGGACTTTTATCCATTCCATTAGCCAAGGAAGGTGCTATTGTTTCCGCTAGTGATATCTCTGCTGCTATGGTTGCTGAAGCTGAGAAGCAGGCAAGAGAAGAGCTCCTGACTGGAAAGGATGAGCTCTCAGCAGCACCAGCGTTACCAAAGTTTGAAGTGAAGGACTTAGAGAGCTTAGATGGTAAATACCACACAGTGGTCTGCTTAGACGTTTTGATACATTATCCTCAAAGTAAAGCAGACGCAATGATTGCCCATCTAGCTTCATTGGCCGAGGATCGCTTAATTTTGAGTTTTGCTCCAAAGACACTCTATTATGATCTGTTGAAGAGGGTTGGGGAGTTGTTCCCCGGTCCTTCAAAGGCAACAAGGGCGTATCTTCACGCAGAGGCGGATGTTGAGAAGGCATTGCAAAAGGTTGGGTGGAGAATAAGAAAGAGAGGCCTAACCACCACGCAGTTTTATTTTGCAAAGCTCATTGAAGCTGTGCCTGCTTAG

Network for GWHGAAZE030801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07109.12	Mg-por_mtran_C	226	321	2.80E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03428	bchM, chlM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0015995	biological_process	chlorophyll biosynthetic process
GO:0046406	molecular_function	magnesium protoporphyrin IX methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	109.514
	SRR3591706	second leaf	309.044
	SRR3591707	mature leaf	164.156
	SRR3591708	Shoot apex	219.320
	SRR3591709	Stem	43.718
	SRR3591710	White floral bud	21.375
	SRR3591711	White flower	35.379
	SRR3591712	Green floral bud	29.378
	SRR3591713	Yellow flower	36.310
SRP173429	SRR8316895	Juvenile bud stage	46.946
	SRR8316896	Juvenile bud stage	46.610
	SRR8316897	Juvenile bud stage	34.952
	SRR8316894	Third green stage	21.531
	SRR8316900	Third green stage	61.317
	SRR8316901	Third green stage	44.600
	SRR8316898	Complete white stage	21.334
	SRR8316899	Complete white stage	43.672
	SRR8316903	Complete white stage	22.984
	SRR8316902	Silver flowering stage	15.484
	SRR8316904	Silver flowering stage	20.084
	SRR8316905	Silver flowering stage	11.388
	SRR8316906	Gold flowering stage	33.505
	SRR8316907	Gold flowering stage	33.446
	SRR8316908	Gold flowering stage	38.626
SRP132670	SRR6706286	Control	100.545
	SRR6706287	Light intensity 50%	83.951
	SRR6706288	Light intensity 20%	91.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.424
	CNS0095593	Slightly white alabastrum(diploid) 2	15.905
	CNS0095594	Slightly white alabastrum(diploid) 3	19.437
	CNS0095595	Whole white alabastrum(diploid) 2	18.628
	CNS0095596	Whole white alabastrum(diploid) 3	24.784
	CNS0095597	Whole white alabastrum(diploid) 4	14.290
	CNS0095598	Silvery flower (diploied) 1	59.861
	CNS0095599	Silvery flower (diploied) 2	36.501
	CNS0095600	Silvery flower (diploied) 3	50.401
	CNS0095601	Golden flower (diploid) 1	48.302
	CNS0095602	Golden flower (diploid) 2	55.207
	CNS0095603	Golden flower (diploid) 3	57.116
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.390
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.730
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.831
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.257
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.760
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.034
	CNS0095610	Silvery flower (tetraploid) 1	72.335
	CNS0095611	Silvery flower (tetraploid) 2	87.972
	CNS0095612	Silvery flower (tetraploid) 3	40.098
	CNS0095613	Golden flower (tetraploid) 1	41.684
	CNS0095614	Golden flower (tetraploid) 2	65.465
	CNS0095615	Golden flower (tetraploid) 3	47.309
CRA001975	CRR073297	Stem 1	98.580
	CRR073298	Stem 2	94.431
	CRR073299	Stem 3	111.492
	CRR073300	Leaf 1	40.746
	CRR073301	Leaf 2	43.481
	CRR073302	Leaf 3	49.037
	CRR073303	Juvenile bud 1	34.304
	CRR073304	Juvenile bud 2	31.560
	CRR073305	Juvenile bud 3	37.101
	CRR073306	Third green 1	11.783
	CRR073307	Third green 2	9.447
	CRR073308	Third green 3	10.387
	CRR073309	Second white 1	19.431
	CRR073310	Second white 2	8.668
	CRR073311	Second white 3	10.126
	CRR073312	Silver flowering 1	9.140
	CRR073313	Silver flowering 2	15.066
	CRR073314	Silver flowering 3	10.228
	CRR073315	Gold flowering 1	194.676
	CRR073316	Gold flowering 2	234.036
	CRR073317	Gold flowering 3	229.795
	CRR073318	Tawny withering 1	42.208
	CRR073319	Tawny withering 2	25.831
	CRR073320	Tawny withering 3	34.688