Gene detail

Detail information of GWHGAAZE030800

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22539.1	7.3006E-135	hypothetical protein JCGZ_26370 [Jatropha curcas]
Swissprot	tr\|C0HJB3\|MANA_CANEN	7E-90	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|W9R0T3\|W9R0T3_9ROSA	2E-160	Lysosomal alpha-mannosidase {ECO:0000313\|EMBL:EXB62832.1}
TAIR10	AT5G13980.2	1E-76	Glycosyl hydrolase family 38 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48636257	48643550	-
GWHAAZE00000009	mRNA	48636257	48643550	-
GWHAAZE00000009	exon	48643525	48643550	-
GWHAAZE00000009	exon	48642504	48642688	-
GWHAAZE00000009	exon	48642181	48642257	-
GWHAAZE00000009	exon	48641985	48642050	-
GWHAAZE00000009	exon	48641830	48641901	-
GWHAAZE00000009	exon	48640783	48640888	-
GWHAAZE00000009	exon	48638781	48639002	-
GWHAAZE00000009	exon	48638538	48638683	-
GWHAAZE00000009	exon	48638344	48638409	-
GWHAAZE00000009	exon	48638151	48638190	-
GWHAAZE00000009	exon	48637969	48638041	-
GWHAAZE00000009	exon	48637744	48637795	-
GWHAAZE00000009	exon	48637558	48637677	-
GWHAAZE00000009	exon	48637332	48637397	-
GWHAAZE00000009	exon	48636429	48636541	-
GWHAAZE00000009	exon	48636257	48636326	-
GWHAAZE00000009	CDS	48643525	48643550	-
GWHAAZE00000009	CDS	48642504	48642688	-
GWHAAZE00000009	CDS	48642181	48642257	-
GWHAAZE00000009	CDS	48641985	48642050	-
GWHAAZE00000009	CDS	48641830	48641901	-
GWHAAZE00000009	CDS	48640783	48640888	-
GWHAAZE00000009	CDS	48638781	48639002	-
GWHAAZE00000009	CDS	48638538	48638683	-
GWHAAZE00000009	CDS	48638344	48638409	-
GWHAAZE00000009	CDS	48638151	48638190	-
GWHAAZE00000009	CDS	48637969	48638041	-
GWHAAZE00000009	CDS	48637744	48637795	-
GWHAAZE00000009	CDS	48637558	48637677	-
GWHAAZE00000009	CDS	48637332	48637397	-
GWHAAZE00000009	CDS	48636429	48636541	-
GWHAAZE00000009	CDS	48636257	48636326	-

Transcript Sequence
>GWHTAAZE030834 ATGTTGGTTCCAACAACTCCATTCAGAAATGGTGGTATGTGCATGCATGATGAGGCAACCCCACATTACATTGATATGATAGATCAGACAACTCTAGGGCTCCGATTTATTAAGGAGGTGTTCAATGTGACTCCAAGAATCGGTTGGCAAATTGATCCTTTGGGACATTCCTCAGTGCAGGCCTACCTACTGGGGGCAGAGGAGACCTCTTATAGAACTAAGCGGAAAGGGGAGCAGAATCTTGAGGTTATCTGGCAGAGTTCTAGGAGTCTTGGTTCATCTGCACAGATTTTTGCTGGTGAACCCCCAGATGGTTTCTATTTTGAAGTAAATGATGTTTCCCCCATTGTCCAGGATGACATCGATTGGTTCGACTACAATGTCCAAGAGCGTGTTGACGATTTTGTAGCTGTGGCTTTATCACAAGCAGCAAGGCAATTAGAATATTTTAATGGAAGGAGTAACAAGGGGCCCACCACAGACACATTGGCCGATGCTTTGGCAATTGATCAACATCTTGATGCAGTTAGTGAAGTTATCAATGAGAATGTCACGGTTCGGGATTCTGTTGGAAATAAAGTTGAATCACAGCTTCGTCCTATACTTGATGCTTCTATAGACCTAAGAAAATATTATGCTACTGCATATATGGCTAGATCCCCAAGTGTGACCCCCAAGTATTGGCTTGCATTTACGGCATCTGTTCCACCTCTGGGTTTTAGCACTTATGTTGTGTCCAGCACTAAAGGGGCAGATGCATCTGCTACTTTAGTGAGTCAAACATTATACAAGTCTGAAGGGAGTGAAAATGATACTATAGAAGTAGGGTGTGGAAATTTGAAGCTAATATATTCTGGGATTGAAGGAAAACTTACTCAATATATTAATAACATAAGCTCGATTGAAGCCTCTATAGAACAATCATACATCTATTATTCTGGAAATGATGGAACCGGCGATCGTCAGGCCGCTGGAGCATACATTTTCCATCCATTCCGAAGGACAGAGTCCTTTAACAGTTCTGCGGGGGGCCACTATATGATGAAGTCCATCAGAGGATTAATTCATGGATATATCAGGCAGATCACAAGAATTTACAAGGAAAAGGAGCATGCTGAAGTTGAATTTATGGTCGGCCCAATACCTATTGATGATGGGATAGGGAAAGAGATTATAACTCAGATTACAACCACTGTGAAAAGCAATAAAACATTCTACACAGATTCTAATGGACGTGATTTCCTTGAGTGGGTTCGAGATTATAGAGCTGACTGGGACCTTGAAGTGAACCAACCTGTCGCAGGAAATTACTATCCTATTAATCTCGGGATTTACATGCAAGATGACAGCGTTGAGTTCTCAATCTTGGTAGATAGATCTGTAGGGGGATCCAGCATTGCCGATGGGGAATTGGAATTGATGCTTCATAGGAGATTGCTCCATGATGATTCTAGAGGTGTACTAGAAGCACTAAATGAAACAGTTTATACTCCTGAATGA

Network for GWHGAAZE030800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.23	Glyco_hydro_38N	8	145	3.30E-24
PF07748.14	Glyco_hydro_38C	278	485	2.50E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01191	MAN2C1	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006013	biological_process	mannose metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004559	molecular_function	alpha-mannosidase activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.124
	SRR3591706	second leaf	1.244
	SRR3591707	mature leaf	1.696
	SRR3591708	Shoot apex	4.512
	SRR3591709	Stem	4.885
	SRR3591710	White floral bud	1.161
	SRR3591711	White flower	2.185
	SRR3591712	Green floral bud	0.466
	SRR3591713	Yellow flower	0.928
SRP173429	SRR8316895	Juvenile bud stage	1.716
	SRR8316896	Juvenile bud stage	2.967
	SRR8316897	Juvenile bud stage	4.366
	SRR8316894	Third green stage	0.977
	SRR8316900	Third green stage	2.519
	SRR8316901	Third green stage	2.207
	SRR8316898	Complete white stage	1.163
	SRR8316899	Complete white stage	4.024
	SRR8316903	Complete white stage	2.170
	SRR8316902	Silver flowering stage	0.485
	SRR8316904	Silver flowering stage	0.632
	SRR8316905	Silver flowering stage	0.567
	SRR8316906	Gold flowering stage	1.291
	SRR8316907	Gold flowering stage	1.186
	SRR8316908	Gold flowering stage	2.157
SRP132670	SRR6706286	Control	1.862
	SRR6706287	Light intensity 50%	2.115
	SRR6706288	Light intensity 20%	1.777
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.767
	CNS0095593	Slightly white alabastrum(diploid) 2	1.781
	CNS0095594	Slightly white alabastrum(diploid) 3	1.411
	CNS0095595	Whole white alabastrum(diploid) 2	1.759
	CNS0095596	Whole white alabastrum(diploid) 3	1.017
	CNS0095597	Whole white alabastrum(diploid) 4	1.805
	CNS0095598	Silvery flower (diploied) 1	6.294
	CNS0095599	Silvery flower (diploied) 2	4.360
	CNS0095600	Silvery flower (diploied) 3	0.643
	CNS0095601	Golden flower (diploid) 1	4.244
	CNS0095602	Golden flower (diploid) 2	2.559
	CNS0095603	Golden flower (diploid) 3	1.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.226
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.470
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.223
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.023
	CNS0095610	Silvery flower (tetraploid) 1	0.353
	CNS0095611	Silvery flower (tetraploid) 2	0.030
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.029
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.033
CRA001975	CRR073297	Stem 1	1.358
	CRR073298	Stem 2	1.565
	CRR073299	Stem 3	0.065
	CRR073300	Leaf 1	1.348
	CRR073301	Leaf 2	1.418
	CRR073302	Leaf 3	0.114
	CRR073303	Juvenile bud 1	0.074
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.415
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.023
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.596
	CRR073316	Gold flowering 2	0.597
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.250
	CRR073319	Tawny withering 2	0.617
	CRR073320	Tawny withering 3	0.256