Gene detail

Detail information of GWHGAAZE030796

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP19763.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q94JM3\|ARFB_ARATH	Auxin response factor 2
trEMBL	tr\|A0A068VJB6\|A0A068VJB6_COFCA	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT5G62000.3	auxin response factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48576282	48581538	-
GWHAAZE00000009	mRNA	48576282	48581538	-
GWHAAZE00000009	exon	48581418	48581538	-
GWHAAZE00000009	exon	48581205	48581320	-
GWHAAZE00000009	exon	48580812	48580907	-
GWHAAZE00000009	exon	48580618	48580674	-
GWHAAZE00000009	exon	48580371	48580526	-
GWHAAZE00000009	exon	48580179	48580263	-
GWHAAZE00000009	exon	48579573	48579663	-
GWHAAZE00000009	exon	48579316	48579480	-
GWHAAZE00000009	exon	48578599	48578718	-
GWHAAZE00000009	exon	48578412	48578487	-
GWHAAZE00000009	exon	48578158	48578329	-
GWHAAZE00000009	exon	48576855	48577765	-
GWHAAZE00000009	exon	48576587	48576777	-
GWHAAZE00000009	exon	48576282	48576447	-
GWHAAZE00000009	CDS	48581418	48581538	-
GWHAAZE00000009	CDS	48581205	48581320	-
GWHAAZE00000009	CDS	48580812	48580907	-
GWHAAZE00000009	CDS	48580618	48580674	-
GWHAAZE00000009	CDS	48580371	48580526	-
GWHAAZE00000009	CDS	48580179	48580263	-
GWHAAZE00000009	CDS	48579573	48579663	-
GWHAAZE00000009	CDS	48579316	48579480	-
GWHAAZE00000009	CDS	48578599	48578718	-
GWHAAZE00000009	CDS	48578412	48578487	-
GWHAAZE00000009	CDS	48578158	48578329	-
GWHAAZE00000009	CDS	48576855	48577765	-
GWHAAZE00000009	CDS	48576587	48576777	-
GWHAAZE00000009	CDS	48576282	48576447	-

Transcript Sequence
>GWHTAAZE030830 ATGGCTTCGGAGGTGTCGAGTAAAGGTAACGTGAGAGAAGAGAGTTTCTCTTCTGGTTACAGCGAGAGGAATGATGGAGGAGGAGTTTCTGGAATAGTTTTGGCGGCTTCGACTGGAAAAGTTGATGAGGAGACCGCGCTTTATACGGAGCTCTGGCGTGCTTGTGCTGGTCCGCTCGTGAGTGTGCCTCGCCAACACGAGCTTGTTTACTATTTTCCTCAGGGACACATTGAGCAGGTGGAGGCGTCTACTAATCAGGTGGCAGACCAGCAGATGCCTGTGTATGATCTTCCATCGAAGATCCTCTGCCGCGTGGTTAATGTCCATTTGAAGGCTGAGCCGGACACTGATGAAGTTTTTTCACAAGTGACTTTGATGCCCGAACCAAATCAAGACGAGAATGCTGTGAAGAAGGAAGCAGTGCCACTACCTCCACCACGCTTTCATGTACATTCCTTTTGTAAAACCCTAACTGCTTCTGATACAAGCACTCATGGTGGGTTTTCGGTGCTGAGACGCCATGCTGATGAATGTCTCCCTCCACTGGACATGACCCAGCAACCCCCCACTCAGGAGTTAGTTGCCAAGGACTTGCATGGAAACGAGTGGCGTTTTAGACATATCTTCAGGGGTCAACCAAGGAGGCACCTGTTGCAAAGCGGCTGGAGTGTCTTTGTTAGCTCCAAGAGGCTTGTTGCCGGGGATGCCTTTATATTCTTGAGAGGTGAGAATGGGGAGCTTCGTGTTGGAGTAAGACGCGCCTTAAGACAGCAGGCTAACATTCCGTCATCAGTCATTTCGAGTCACAGTATGCATCTCGGTGTCCTGGCAACTGCTTGGCATGCAATTCAGACGGGAACAATGTTCACAGTCTATTACAAGCCTCGGACCAGCCCTGCTGAATTCATTGTTCCATTTGATCAGTATATGGAGTCTGTGAAGAATAATTATTCTATTGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCAGAGCAGAGGTTTGCGGGAACCATTGTTGGGATTGAAGAATCTGATCCCAAAAAGTGGCCAGATTCAAAGTGGAGATGTCTAAAGGTGCGATGGGATGAAACTTCTAGCATTCCTCGTCCAGAAAGAGTTTCTCCATGGAAAATAGAACCTGCTGTGACTCCTCCTGCACTAAATTCACACCCAGTGCCCAGACAGAAAAGGCCTCGATCAAGCATGTTGCCTTCATCGCCTGATTCATCTGTCCTAACGAGGGAAGGTTCATTTAAGGTAGCAGTAGACCCTTCACCAGCAAATGGATTTTCAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGCACTTTTGCTGAGATTAACGAATCTGATTCCTCAGATAAGCCAATCGTATGGCCTCCTTCAGTTGACGACGAGAGGAATGATGTTGTTTCTGGTGCACGAAGATATGGGTCAGAGAAGTGGTTACCCTTGGGGAGGGGTGAATCATCTTTCACAGATCTATTATCAGGTTTTGGAACCCAAGCTGCTACAACATCTCATGAGTTCTGTACTCCCTCTAGTGGTCAAAGTGCAGCCACTGCAAACTCGATGAAACAAATACCAAATCAGGAAGGCAAGTTCAATTTACTTTCAAATCCGTGGTCTAGGTACCCTTCCAATCTATCCCTTAACTTGTCAAACTCTAGCACAAAAGTTCAATCCCAAGGAAGTGATATTCCTCTCCAGACACGCGGGGATGTTAGATATGATGGTTATAGTGACCACCCCATGCTTCCTCTTCAGAGGGGAGAGCACCTACACAGAAATTGGCCGATGCCGCCTCCACTTTCCTCTTATCTTCAGATGTCAGCTTCGGTAGAACTCCACAAGGCTGTTAAACCTAGAGATGGCAGCTGCAAACTCTTTGGTATACCTCTCATCAGTAACCCTGTTACAGAGCCAGCTGTGTCCCCCAGAAACACAATGATGGAGGAAGAAGGGGATATTCATCTTGGAATGCACCCACAGCAGTCCCCTGCCTTTGAATCTGAACAAGCAAAGGTGTCAAAAATGACATCTAATATATCTGCCAGTCATGAGCAGGATCAACTAATCCGAACCGGCCAGCGACTTGTGGGAGATGGTCAGGGCAAAGTTCAGGGCGGTTCTACTAGGAGTTGTACAAAGGTTCATAAGCAGGGTATTGCCCTTGGTAGGTCTGTGGACCTTGCAAAGTTCAACAATTATGACGAATTGATTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTAAAGGCTTGCAACAAGAATTGGCTGGTCGTATATACAGATGATGAGGGTGATATGATGCTTGTTGGAGATGATCCATGGCAGGAATTTTGTGGCATGGTTCGAAAAATCTTCATTTATACTCGAGAGGAGGTTCAGCGAATGAACCCAGGGACCCTAAATACAAAGGGTGAGGTAAATGCAGAAGGCATGGAAGCTCAAGAAGTGAAGAATTTGCAGCCTTCATTCTCCACTCACAACAATTCTTAG

Network for GWHGAAZE030796

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	153	254	3.20E-21
PF06507.14	Auxin_resp	279	361	1.80E-35
PF02309.17	AUX_IAA	715	803	9.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.548
	SRR3591706	second leaf	84.086
	SRR3591707	mature leaf	101.525
	SRR3591708	Shoot apex	73.033
	SRR3591709	Stem	99.362
	SRR3591710	White floral bud	95.328
	SRR3591711	White flower	168.622
	SRR3591712	Green floral bud	81.000
	SRR3591713	Yellow flower	100.616
SRP173429	SRR8316895	Juvenile bud stage	34.302
	SRR8316896	Juvenile bud stage	45.052
	SRR8316897	Juvenile bud stage	17.418
	SRR8316894	Third green stage	19.703
	SRR8316900	Third green stage	30.660
	SRR8316901	Third green stage	36.395
	SRR8316898	Complete white stage	20.024
	SRR8316899	Complete white stage	67.626
	SRR8316903	Complete white stage	37.782
	SRR8316902	Silver flowering stage	31.341
	SRR8316904	Silver flowering stage	40.252
	SRR8316905	Silver flowering stage	18.362
	SRR8316906	Gold flowering stage	61.264
	SRR8316907	Gold flowering stage	56.267
	SRR8316908	Gold flowering stage	69.415
SRP132670	SRR6706286	Control	37.379
	SRR6706287	Light intensity 50%	45.570
	SRR6706288	Light intensity 20%	45.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.157
	CNS0095593	Slightly white alabastrum(diploid) 2	26.516
	CNS0095594	Slightly white alabastrum(diploid) 3	23.148
	CNS0095595	Whole white alabastrum(diploid) 2	24.032
	CNS0095596	Whole white alabastrum(diploid) 3	13.544
	CNS0095597	Whole white alabastrum(diploid) 4	19.302
	CNS0095598	Silvery flower (diploied) 1	80.350
	CNS0095599	Silvery flower (diploied) 2	52.347
	CNS0095600	Silvery flower (diploied) 3	87.682
	CNS0095601	Golden flower (diploid) 1	50.450
	CNS0095602	Golden flower (diploid) 2	95.246
	CNS0095603	Golden flower (diploid) 3	95.858
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.910
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.884
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.056
	CNS0095610	Silvery flower (tetraploid) 1	93.161
	CNS0095611	Silvery flower (tetraploid) 2	103.478
	CNS0095612	Silvery flower (tetraploid) 3	95.683
	CNS0095613	Golden flower (tetraploid) 1	55.569
	CNS0095614	Golden flower (tetraploid) 2	84.186
	CNS0095615	Golden flower (tetraploid) 3	113.792
CRA001975	CRR073297	Stem 1	86.640
	CRR073298	Stem 2	79.197
	CRR073299	Stem 3	94.142
	CRR073300	Leaf 1	65.624
	CRR073301	Leaf 2	61.624
	CRR073302	Leaf 3	50.861
	CRR073303	Juvenile bud 1	42.141
	CRR073304	Juvenile bud 2	38.342
	CRR073305	Juvenile bud 3	77.336
	CRR073306	Third green 1	74.959
	CRR073307	Third green 2	46.057
	CRR073308	Third green 3	57.935
	CRR073309	Second white 1	72.468
	CRR073310	Second white 2	74.025
	CRR073311	Second white 3	75.524
	CRR073312	Silver flowering 1	55.606
	CRR073313	Silver flowering 2	65.501
	CRR073314	Silver flowering 3	56.894
	CRR073315	Gold flowering 1	56.410
	CRR073316	Gold flowering 2	84.743
	CRR073317	Gold flowering 3	74.598
	CRR073318	Tawny withering 1	51.387
	CRR073319	Tawny withering 2	38.302
	CRR073320	Tawny withering 3	51.534