Gene detail

Detail information of GWHGAAZE030795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFP25102.1	0	ICE1 [Camellia sinensis]
Swissprot	tr\|Q9LSE2\|ICE1_ARATH	3E-114	Transcription factor ICE1
trEMBL	tr\|I7EMG7\|I7EMG7_CAMSI	0	ICE1 {ECO:0000313\|EMBL:AFP25102.1}
TAIR10	AT3G26744.4	5E-91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48567756	48571535	+
GWHAAZE00000009	mRNA	48567756	48571535	+
GWHAAZE00000009	exon	48567756	48568850	+
GWHAAZE00000009	exon	48570251	48570478	+
GWHAAZE00000009	exon	48570847	48571017	+
GWHAAZE00000009	exon	48571461	48571535	+
GWHAAZE00000009	CDS	48567756	48568850	+
GWHAAZE00000009	CDS	48570251	48570478	+
GWHAAZE00000009	CDS	48570847	48571017	+
GWHAAZE00000009	CDS	48571461	48571535	+

Transcript Sequence
>GWHTAAZE030829 ATGTTGCCATGTACAAACACCCCTGTTTGGGTGGAGGGCAAAGAAGAAGAAGAACAACAAATTACTCCACGGTCTAAAGACATCAATAACAATGGCTATTACCTTTTAGAGAACAAACACGAAATGGGTTCAATCTCTACCTTCAAATCAATGCTTCAAGTTGAAGAAGAAGAAGAAGAATGTTACTTAACTAGTAACAACATCTTCACCCCTGACAACAATCTACTGTTACAACCAGTTGACTCTTCTTCTTCTTGTTCACCATCATCATCAGCTTCAATGTTCAACAATCTCGACCCATCTCAGGTACACTACTTTTTGCCTCCAAAACCTGCTGACCCTTTACTCCTCACACATTTATCTAGCAACCCATTAGATAATAGTTTCGATCTAGGCTGTGAAACTCTGTTTCTTGACAACCAAGCTTTGAGCTCCATGAGCAGGGGAGGTGAGATTTTGAGTGAGTTCACCGATTTCAGCATGCAAAACCCGATGGATATTCCCTATATGAGCTCAGATCCTATATTTTCAACTACCCATTTGCTTCAATTGGCAGGAGATAGTGGTTTAATTAGTGCTGGTTTCGGTCCTTCTGGTTTTAAGGGTTTTGTGGAGGGTTTTGGGAATCCTTTGTTTCTGAATAGGTCTAAGTTGTTGAAACCGCTTGAAAATTTGGCTTCAATTGGAGCACAACCCACACTATTTCAAAAGAGGGCCGCTCTTCGGAAGAACTTTGGCGATGATGGAGGAATTTTGGGGTTTTTGGACATAGAGTGTGGTACTACTAATGTTTCAGGGTACGAGGGAAAGGTTAAAGTGGGTGAAGTGAATGAAATGAAGAGGAAGAACAGCAATTGTGACGATTTGAGCATTGATGGGCCCGTTTTGAATTTTGATTCGGGTGAGTTTAAGGAGAAGATTGAACTGGAAGAAAGTGGGAATAACTCAAATGCTAATAGTACTGTTGTTACTGGTGTGGATCATAAAGGGAAGAAGCGGCTTCCAGCTAAAAATTTGATGGCCGAACGCCGCAGAAGAAAGAAGCTCAACGATCGGCTTTACATGCTGAGATCTATTGTACCAAAAATTAGCAAGATGGATAGGGCTTCAATTCTTGGGGATGCAATTGACTACTTGAAGGAACTCCTGCAAAATATCAGTGACCTCCAAAATGAACTGGAGACAACCCCTCTTAGCTCTTCACAGACACTTACCACAAGCTTCTGTCCTTCAACGCCCACTCCGGGTACCATGATATCTGGCCATATCAAGGAAGAACTTTGTCAGAGCTTGTTGCCGAGCCCTACAGGACATCCTGCGATGGTTGAAGTAACGGTGGGAGAAGGAAAAGGTGTAAATATCCACATGTTTTGTGGCTGCAGGCCGGGTCTCTTGCTCTCAACAATGACGGCTCTAGATAACCTTGGCCTAGATATCCAACAAGCTGTTATAAGCTGCTTCAATGGGTTTGCATTAGATATCTTCCACGCAGAGCAATGCAACGAAGGACGAGATGTGCATCCTGAGCAAATCAAATCAGTACTCTTGGATTCAGCTGGCACGCTGTAG

Network for GWHGAAZE030795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	339	382	7.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.873
	SRR3591706	second leaf	3.266
	SRR3591707	mature leaf	2.192
	SRR3591708	Shoot apex	8.691
	SRR3591709	Stem	0.908
	SRR3591710	White floral bud	1.746
	SRR3591711	White flower	2.234
	SRR3591712	Green floral bud	2.250
	SRR3591713	Yellow flower	0.609
SRP173429	SRR8316895	Juvenile bud stage	4.312
	SRR8316896	Juvenile bud stage	3.248
	SRR8316897	Juvenile bud stage	2.117
	SRR8316894	Third green stage	1.831
	SRR8316900	Third green stage	4.585
	SRR8316901	Third green stage	3.465
	SRR8316898	Complete white stage	0.308
	SRR8316899	Complete white stage	3.108
	SRR8316903	Complete white stage	0.679
	SRR8316902	Silver flowering stage	0.257
	SRR8316904	Silver flowering stage	0.312
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.661
	SRR8316907	Gold flowering stage	0.580
	SRR8316908	Gold flowering stage	0.712
SRP132670	SRR6706286	Control	2.207
	SRR6706287	Light intensity 50%	2.329
	SRR6706288	Light intensity 20%	2.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.847
	CNS0095593	Slightly white alabastrum(diploid) 2	4.753
	CNS0095594	Slightly white alabastrum(diploid) 3	3.394
	CNS0095595	Whole white alabastrum(diploid) 2	4.064
	CNS0095596	Whole white alabastrum(diploid) 3	2.800
	CNS0095597	Whole white alabastrum(diploid) 4	2.544
	CNS0095598	Silvery flower (diploied) 1	4.977
	CNS0095599	Silvery flower (diploied) 2	5.114
	CNS0095600	Silvery flower (diploied) 3	1.697
	CNS0095601	Golden flower (diploid) 1	6.658
	CNS0095602	Golden flower (diploid) 2	2.314
	CNS0095603	Golden flower (diploid) 3	3.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.061
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.641
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.936
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.947
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.297
	CNS0095610	Silvery flower (tetraploid) 1	0.833
	CNS0095611	Silvery flower (tetraploid) 2	1.687
	CNS0095612	Silvery flower (tetraploid) 3	1.062
	CNS0095613	Golden flower (tetraploid) 1	0.266
	CNS0095614	Golden flower (tetraploid) 2	0.317
	CNS0095615	Golden flower (tetraploid) 3	0.046
CRA001975	CRR073297	Stem 1	7.697
	CRR073298	Stem 2	7.114
	CRR073299	Stem 3	7.948
	CRR073300	Leaf 1	4.264
	CRR073301	Leaf 2	5.765
	CRR073302	Leaf 3	5.104
	CRR073303	Juvenile bud 1	2.731
	CRR073304	Juvenile bud 2	1.060
	CRR073305	Juvenile bud 3	1.994
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.216
	CRR073310	Second white 2	0.322
	CRR073311	Second white 3	0.091
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.005
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.714
	CRR073316	Gold flowering 2	7.457
	CRR073317	Gold flowering 3	5.079
	CRR073318	Tawny withering 1	3.250
	CRR073319	Tawny withering 2	1.804
	CRR073320	Tawny withering 3	2.572