Detail information of GWHGAAZE030788


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006363974.14.82884E-94PREDICTED: transcription factor bHLH137-like [Solanum tuberosum]
Swissprottr|Q93W88|BH137_ARATH2E-58Transcription factor bHLH137
trEMBLtr|M1BRC8|M1BRC8_SOLTU2E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400051137}
TAIR10AT5G50915.21E-45basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4847120248475484-
GWHAAZE00000009mRNA4847120248475484-
GWHAAZE00000009exon4847508348475484-
GWHAAZE00000009exon4847419548474425-
GWHAAZE00000009exon4847299848473063-
GWHAAZE00000009exon4847277048472838-
GWHAAZE00000009exon4847258148472652-
GWHAAZE00000009exon4847232448472467-
GWHAAZE00000009exon4847202048472141-
GWHAAZE00000009exon4847120248471304-
GWHAAZE00000009CDS4847508348475484-
GWHAAZE00000009CDS4847419548474425-
GWHAAZE00000009CDS4847299848473063-
GWHAAZE00000009CDS4847277048472838-
GWHAAZE00000009CDS4847258148472652-
GWHAAZE00000009CDS4847232448472467-
GWHAAZE00000009CDS4847204948472141-
GWHAAZE00000009three_prime_UTR4847202048472048-
GWHAAZE00000009three_prime_UTR4847120248471304-
Transcript Sequence

Network for GWHGAAZE030788

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH2052525.80E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.777
SRR3591706second leaf1.457
SRR3591707mature leaf1.178
SRR3591708Shoot apex10.435
SRR3591709Stem5.323
SRR3591710White floral bud6.175
SRR3591711White flower12.027
SRR3591712Green floral bud4.295
SRR3591713Yellow flower4.590
SRP173429 SRR8316895Juvenile bud stage 1.768
SRR8316896Juvenile bud stage 1.200
SRR8316897Juvenile bud stage 0.470
SRR8316894Third green stage 2.292
SRR8316900Third green stage 5.164
SRR8316901Third green stage 3.313
SRR8316898Complete white stage 0.396
SRR8316899Complete white stage 4.578
SRR8316903Complete white stage 1.577
SRR8316902Silver flowering stage0.742
SRR8316904Silver flowering stage0.708
SRR8316905Silver flowering stage0.378
SRR8316906Gold flowering stage 1.660
SRR8316907Gold flowering stage 2.012
SRR8316908Gold flowering stage 0.786
SRP132670SRR6706286Control3.405
SRR6706287Light intensity 50%3.893
SRR6706288Light intensity 20%3.764
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.788
CNS0095593Slightly white alabastrum(diploid) 24.073
CNS0095594Slightly white alabastrum(diploid) 33.990
CNS0095595Whole white alabastrum(diploid) 23.759
CNS0095596Whole white alabastrum(diploid) 31.437
CNS0095597Whole white alabastrum(diploid) 41.916
CNS0095598Silvery flower (diploied) 118.815
CNS0095599Silvery flower (diploied) 215.166
CNS0095600Silvery flower (diploied) 31.819
CNS0095601Golden flower (diploid) 114.516
CNS0095602Golden flower (diploid) 27.239
CNS0095603Golden flower (diploid) 35.823
CNS0095604Slightly white alabastrum(tetraploid) 15.382
CNS0095605Slightly white alabastrum(tetraploid) 24.957
CNS0095606Slightly white alabastrum(tetraploid) 312.497
CNS0095607Whole white alabastrum(tetraploid) 14.358
CNS0095608Whole white alabastrum(tetraploid) 20.769
CNS0095609Whole white alabastrum(tetraploid) 31.895
CNS0095610Silvery flower (tetraploid) 10.143
CNS0095611Silvery flower (tetraploid) 22.412
CNS0095612Silvery flower (tetraploid) 30.474
CNS0095613Golden flower (tetraploid) 10.103
CNS0095614Golden flower (tetraploid) 20.414
CNS0095615Golden flower (tetraploid) 30.101
CRA001975CRR073297Stem 13.409
CRR073298Stem 24.695
CRR073299Stem 33.984
CRR073300Leaf 15.281
CRR073301Leaf 24.519
CRR073302Leaf 34.539
CRR073303Juvenile bud 14.425
CRR073304Juvenile bud 23.100
CRR073305Juvenile bud 34.076
CRR073306Third green 10.410
CRR073307Third green 20.237
CRR073308Third green 30.292
CRR073309Second white 10.002
CRR073310Second white 20.127
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.012
CRR073315Gold flowering 11.395
CRR073316Gold flowering 22.010
CRR073317Gold flowering 30.682
CRR073318Tawny withering 10.329
CRR073319Tawny withering 21.340
CRR073320Tawny withering 30.843