Gene detail

Detail information of GWHGAAZE030785

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611514.1	0	PREDICTED: long chain base biosynthesis protein 2a [Nicotiana tomentosiformis]
COG	YP_721697.1	2E-79	8-amino-7-oxononanoate synthase
Swissprot	tr\|Q9LSZ9\|LCB2A_ARATH	0	Long chain base biosynthesis protein 2a
trEMBL	tr\|B3Y000\|B3Y000_NICBE	0	Serine palmitoyltransferase {ECO:0000313\|EMBL:BAG68298.1}
TAIR10	AT5G23670.2	0	long chain base2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48429801	48434562	+
GWHAAZE00000009	mRNA	48429801	48434562	+
GWHAAZE00000009	exon	48429801	48429970	+
GWHAAZE00000009	exon	48430113	48430178	+
GWHAAZE00000009	exon	48430950	48431038	+
GWHAAZE00000009	exon	48431254	48431399	+
GWHAAZE00000009	exon	48431473	48431597	+
GWHAAZE00000009	exon	48431693	48431786	+
GWHAAZE00000009	exon	48431881	48432044	+
GWHAAZE00000009	exon	48432781	48432942	+
GWHAAZE00000009	exon	48433116	48433242	+
GWHAAZE00000009	exon	48433346	48433512	+
GWHAAZE00000009	exon	48433654	48433761	+
GWHAAZE00000009	exon	48434467	48434562	+
GWHAAZE00000009	five_prime_UTR	48429801	48429844	+
GWHAAZE00000009	CDS	48429845	48429970	+
GWHAAZE00000009	CDS	48430113	48430178	+
GWHAAZE00000009	CDS	48430950	48431038	+
GWHAAZE00000009	CDS	48431254	48431399	+
GWHAAZE00000009	CDS	48431473	48431597	+
GWHAAZE00000009	CDS	48431693	48431786	+
GWHAAZE00000009	CDS	48431881	48432044	+
GWHAAZE00000009	CDS	48432781	48432942	+
GWHAAZE00000009	CDS	48433116	48433242	+
GWHAAZE00000009	CDS	48433346	48433512	+
GWHAAZE00000009	CDS	48433654	48433761	+
GWHAAZE00000009	CDS	48434467	48434562	+

Transcript Sequence
>GWHTAAZE030819 AACCTCCAGATCTGTTCTTCGGTAGCTCTCAATCACCGATCACAATGATCACAATTCCGTATTTGACCGCTTTGTCAACCTATTTCAGCTATGGATTGCTATTCGCCTTTGGTCAATTGCGAGATTTCTTTAGAAGACTTATCGATTGGTGGCATGCCAGTAATCTTCAGGGTTATGCACCGATCTGCTTGGGGCTTGAGGATTTTTATATTCGGCGGTTGTATCTCCGTATCCAGGACTGTTTTGGACGACCTATATCGAGCCCTCCTGATGCTTGGTTTGATGTGGTGGAGCGTGTGTCCAAGGATTATAACAAGACACTAAAGAGAACCACAAAGATTAGTAGGTGCCTTAACTTGGGATCTTACAATTACCTTGGGTTCGCTGCATCAGATGAATACTGTACACCCCGTGTGATTGAGTCCTTGAAGAAATTTTCTCCAAGCACCTGCAGTTCTCGTGTAGATGGAGGCACTACAACACTGCATACTGACTTGGAGGAGTGTGTGGCTAATTTTGTTGGAAAGCCAGCTGCTTTAGTTACTGGCATGGGCTACGTGACAAACTCTGCCATCCTTCCTGTCTTGATTGGAAAAGGAGGGTTGATCATTAGTGACTCGCTAAACCACAATTCTATTGTCAACGGTGCTAGAGGGTCAGGAGCTACCATTCGAGTTTTTCAACATAACACACCATCCCACTTGGAGAAAGTTTTGAGAGAACATATTGCTGAGGGGCAACCCAGGACACACAGACCGTGGAAGAAGATAATCGTTATTGTTGAGGGGATATACAGTATGGAAGGGGAACTCTGCAAACTTCCAGAAATTGTTGCCATATGCAAGAAGTACAAGGCATATGTTTATTTGGATGAGGCTCATAGCATTGGAGCAGTTGGGAAAACAGGACGGGGTGTCTGTGAGCTTCTAGGAGTGGATACAGCTGATGTTGATGTCATGATGGGAACGTTTACAAAATCTTTTGGATCGTGTGGTGGTTATATTGCGGGGTCCAAGGAACTTATTCAATATTTGAGGTACACTTGTCCTGCTCATTTGTATGCCACATCAATATCACCTCCAGCTGCACAACAGATTATTTCTTCCATAAAAGTTATTCTTGGAGAGGATGGTTCTAGTAGGGGGGCCCAAAAACTTGCACGAATTCGGGAGAACAGCAACTATTTCAGGTCAGAACTGCAGAAGATGGGCTTTGAGGTTTTAGGCGATAATGATTCACCCGTAATGCCTATAATGCTCTATAATCCAGCAAAAATCCCTGCCTTTTCACGGGAGTGTCTTAAACGCAATGTGGCTGTTGTGACAGTTGCATTTCCAGCTACCCCATTACTGTTGGCCAGAGCGCGCATTTGCATTTCTGCTGCTCACTCGAGGGATGACATGATCAAAGCCTTAGAGGTGATAAGCACAGTTGGAGACATGGTGGGCATAAAATACTTTCCTGCAGAGCCTAAAAAGCAGCAGCTGGAAGAAGGCAGAGTCAAGTTGGAGTAG

Network for GWHGAAZE030785

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	102	460	3.00E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00654	SPT	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071
		Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	144.035
	SRR3591706	second leaf	71.119
	SRR3591707	mature leaf	84.638
	SRR3591708	Shoot apex	85.158
	SRR3591709	Stem	172.549
	SRR3591710	White floral bud	242.098
	SRR3591711	White flower	153.248
	SRR3591712	Green floral bud	200.900
	SRR3591713	Yellow flower	144.848
SRP173429	SRR8316895	Juvenile bud stage	66.464
	SRR8316896	Juvenile bud stage	109.466
	SRR8316897	Juvenile bud stage	55.214
	SRR8316894	Third green stage	47.056
	SRR8316900	Third green stage	157.330
	SRR8316901	Third green stage	155.342
	SRR8316898	Complete white stage	64.888
	SRR8316899	Complete white stage	143.441
	SRR8316903	Complete white stage	117.932
	SRR8316902	Silver flowering stage	59.605
	SRR8316904	Silver flowering stage	76.053
	SRR8316905	Silver flowering stage	39.454
	SRR8316906	Gold flowering stage	127.020
	SRR8316907	Gold flowering stage	126.548
	SRR8316908	Gold flowering stage	129.621
SRP132670	SRR6706286	Control	171.192
	SRR6706287	Light intensity 50%	180.725
	SRR6706288	Light intensity 20%	179.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	120.488
	CNS0095593	Slightly white alabastrum(diploid) 2	107.119
	CNS0095594	Slightly white alabastrum(diploid) 3	117.157
	CNS0095595	Whole white alabastrum(diploid) 2	181.685
	CNS0095596	Whole white alabastrum(diploid) 3	198.500
	CNS0095597	Whole white alabastrum(diploid) 4	215.604
	CNS0095598	Silvery flower (diploied) 1	113.133
	CNS0095599	Silvery flower (diploied) 2	108.869
	CNS0095600	Silvery flower (diploied) 3	157.079
	CNS0095601	Golden flower (diploid) 1	126.816
	CNS0095602	Golden flower (diploid) 2	170.882
	CNS0095603	Golden flower (diploid) 3	166.221
	CNS0095604	Slightly white alabastrum(tetraploid) 1	171.362
	CNS0095605	Slightly white alabastrum(tetraploid) 2	160.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	148.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	226.239
	CNS0095608	Whole white alabastrum(tetraploid) 2	236.339
	CNS0095609	Whole white alabastrum(tetraploid) 3	194.751
	CNS0095610	Silvery flower (tetraploid) 1	162.366
	CNS0095611	Silvery flower (tetraploid) 2	179.494
	CNS0095612	Silvery flower (tetraploid) 3	166.637
	CNS0095613	Golden flower (tetraploid) 1	111.348
	CNS0095614	Golden flower (tetraploid) 2	164.975
	CNS0095615	Golden flower (tetraploid) 3	181.813
CRA001975	CRR073297	Stem 1	106.953
	CRR073298	Stem 2	102.065
	CRR073299	Stem 3	100.787
	CRR073300	Leaf 1	149.539
	CRR073301	Leaf 2	125.468
	CRR073302	Leaf 3	104.445
	CRR073303	Juvenile bud 1	152.233
	CRR073304	Juvenile bud 2	136.359
	CRR073305	Juvenile bud 3	149.726
	CRR073306	Third green 1	100.007
	CRR073307	Third green 2	92.860
	CRR073308	Third green 3	95.742
	CRR073309	Second white 1	84.354
	CRR073310	Second white 2	77.184
	CRR073311	Second white 3	77.615
	CRR073312	Silver flowering 1	104.466
	CRR073313	Silver flowering 2	113.483
	CRR073314	Silver flowering 3	95.051
	CRR073315	Gold flowering 1	67.200
	CRR073316	Gold flowering 2	91.007
	CRR073317	Gold flowering 3	84.914
	CRR073318	Tawny withering 1	124.130
	CRR073319	Tawny withering 2	97.436
	CRR073320	Tawny withering 3	118.656