Detail information of GWHGAAZE030784


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010250570.14.04419E-83PREDICTED: uncharacterized protein LOC104592784 [Nelumbo nucifera]
trEMBLtr|F6H446|F6H446_VITVI3E-84Putative uncharacterized protein {ECO:0000313|EMBL:CCB46990.1}
TAIR10AT5G14030.42E-58translocon-associated protein beta (TRAPB) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4842478248427357+
GWHAAZE00000009mRNA4842478248427357+
GWHAAZE00000009exon4842478248424957+
GWHAAZE00000009exon4842631848426416+
GWHAAZE00000009exon4842662048426728+
GWHAAZE00000009exon4842681748426888+
GWHAAZE00000009exon4842723848427357+
GWHAAZE00000009CDS4842478248424957+
GWHAAZE00000009CDS4842631848426416+
GWHAAZE00000009CDS4842662048426728+
GWHAAZE00000009CDS4842681748426888+
GWHAAZE00000009CDS4842723848427357+
Transcript Sequence

Network for GWHGAAZE030784

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05753.15TRAP_beta141867.90E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13250SSR2 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.406
SRR3591706second leaf3.404
SRR3591707mature leaf5.973
SRR3591708Shoot apex17.543
SRR3591709Stem14.838
SRR3591710White floral bud13.124
SRR3591711White flower9.199
SRR3591712Green floral bud31.766
SRR3591713Yellow flower5.018
SRP173429 SRR8316895Juvenile bud stage 8.519
SRR8316896Juvenile bud stage 17.807
SRR8316897Juvenile bud stage 10.804
SRR8316894Third green stage 6.972
SRR8316900Third green stage 18.459
SRR8316901Third green stage 11.972
SRR8316898Complete white stage 1.368
SRR8316899Complete white stage 6.834
SRR8316903Complete white stage 2.291
SRR8316902Silver flowering stage0.768
SRR8316904Silver flowering stage0.658
SRR8316905Silver flowering stage0.212
SRR8316906Gold flowering stage 0.288
SRR8316907Gold flowering stage 0.533
SRR8316908Gold flowering stage 2.699
SRP132670SRR6706286Control19.290
SRR6706287Light intensity 50%18.288
SRR6706288Light intensity 20%19.240
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.598
CNS0095593Slightly white alabastrum(diploid) 223.187
CNS0095594Slightly white alabastrum(diploid) 324.016
CNS0095595Whole white alabastrum(diploid) 214.933
CNS0095596Whole white alabastrum(diploid) 321.363
CNS0095597Whole white alabastrum(diploid) 414.701
CNS0095598Silvery flower (diploied) 112.092
CNS0095599Silvery flower (diploied) 29.091
CNS0095600Silvery flower (diploied) 35.060
CNS0095601Golden flower (diploid) 110.580
CNS0095602Golden flower (diploid) 25.732
CNS0095603Golden flower (diploid) 35.764
CNS0095604Slightly white alabastrum(tetraploid) 114.423
CNS0095605Slightly white alabastrum(tetraploid) 215.678
CNS0095606Slightly white alabastrum(tetraploid) 314.823
CNS0095607Whole white alabastrum(tetraploid) 18.694
CNS0095608Whole white alabastrum(tetraploid) 23.167
CNS0095609Whole white alabastrum(tetraploid) 312.778
CNS0095610Silvery flower (tetraploid) 11.979
CNS0095611Silvery flower (tetraploid) 23.869
CNS0095612Silvery flower (tetraploid) 32.911
CNS0095613Golden flower (tetraploid) 10.446
CNS0095614Golden flower (tetraploid) 21.952
CNS0095615Golden flower (tetraploid) 31.931
CRA001975CRR073297Stem 114.924
CRR073298Stem 210.926
CRR073299Stem 316.364
CRR073300Leaf 114.438
CRR073301Leaf 214.506
CRR073302Leaf 318.660
CRR073303Juvenile bud 116.387
CRR073304Juvenile bud 211.977
CRR073305Juvenile bud 39.515
CRR073306Third green 10.953
CRR073307Third green 20.663
CRR073308Third green 30.332
CRR073309Second white 10.842
CRR073310Second white 20.081
CRR073311Second white 30.205
CRR073312Silver flowering 10.082
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.612
CRR073316Gold flowering 20.878
CRR073317Gold flowering 32.332
CRR073318Tawny withering 14.319
CRR073319Tawny withering 24.287
CRR073320Tawny withering 35.963