Gene detail

Detail information of GWHGAAZE030761

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073093.1	0	PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Sesamum indicum]
COG	YP_004968926.1	3E-26	acyl-ACP thioesterase
Swissprot	tr\|Q9SJE2\|FATB_ARATH	3E-117	Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor)
trEMBL	tr\|A5AV65\|A5AV65_VITVI	1E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60643.1}
TAIR10	AT1G08510.1	7E-97	fatty acyl-ACP thioesterases B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48085193	48087544	-
GWHAAZE00000009	mRNA	48085193	48087544	-
GWHAAZE00000009	exon	48085193	48085441	-
GWHAAZE00000009	exon	48085753	48085821	-
GWHAAZE00000009	exon	48085927	48086104	-
GWHAAZE00000009	exon	48086292	48086405	-
GWHAAZE00000009	exon	48086602	48086735	-
GWHAAZE00000009	exon	48087137	48087544	-
GWHAAZE00000009	CDS	48087137	48087544	-
GWHAAZE00000009	CDS	48086602	48086735	-
GWHAAZE00000009	CDS	48086292	48086405	-
GWHAAZE00000009	CDS	48085927	48086104	-
GWHAAZE00000009	CDS	48085753	48085821	-
GWHAAZE00000009	CDS	48085193	48085441	-

Transcript Sequence
>GWHTAAZE030795 ATGACATCAATGGCTTCAACCCACAATGCTACTCTGTATTACTCAGAGCAATTGCCAAGAAAGAAAATGGGGATGGCAATGCAAGTTTTGAAGGTGGGTTATTGTGGTCCAAAGAAGGCAGAGAGATGCTATATGGTGAGAGCAAAGAGTAGCAGTTATAAGGGGGTGGATGTGGTTAATGGGGAGAAGGTGAATGGGGTTCATGTGGGTGGAGTTCCATATTTGGGACAGAGGAGTACTGAATTAGTTAAAGAAAAGAGCAATAATAGTAGTAGTGGTGACCATGCATATCTGCTAGGGAGGTTTGTTGAAGATCGTGTGGTTTATAGACAGACTTTTGTTATTAGATCATATGAGATCGGACCCGACAAGACTGCTACAATGGAAACCTTGATGAATCTCCTCCAGGAGACAGCGTTGAATCATGTGGCAAGCTCTGGTCTAGCGGGGAATGGGTTCGGTGCCACCCATGAAATGAGTCTTAGGAAACTCATTTGGGTTGTCACTCGCATTCACGTTCAAGTTGACAAATATAGCTCCTGGGGAGATGTGGTGGAGATTGATACGTGGGTTGATGCAGCTGGGAAAAATGGAATGCGTCGTGACTGGATCATTCGAGACTACAACACCCAAAAAATCATTACTAAAGCTACAAGCACATGGGTGATCATGAACAGAGAAACAAGAAGGTTGTCTAAAATCCCCGAAGAGGTAAGAAAAGAAGTCCAACCTTTCTACCTCAACCGCGTCTCAATCCCAAAAGAAGACGCTGACAGTGAAAAGATTGAGAAACTCACCGATGAAACTGCCAAGAGGGTTCGATCAGGCCTAGCTCCAAGATGGAGTGACATGGATGCTAACCAACATGTAAATAATGTCAAGTACATAGGATGGATTTTGGAGAGTGTGCCAACAAATGTGTTAGAAGAGTACAATCTGACAAGCATGACATTAGAGTACAGACGAGAATGCAGGCAATCCAATATGCTAGACTCCCTGACGAGCATGGCCAAAAGGGGGAACGAAGACCTGAAAATTAGTACTAGTGAAAAAGATTTGGAATGCACGCACTTGCTTCGAATGCAAGCTGATAAGGCGGAGATAGTCCGAGCTAGATCGGTGTGGCTATCTAAACAAAAGCATAACGTGTGA

Network for GWHGAAZE030761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01643.18	Acyl-ACP_TE	107	375	1.40E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10781	FATB	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016790	molecular_function	thiolester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.255
	SRR3591706	second leaf	8.619
	SRR3591707	mature leaf	3.317
	SRR3591708	Shoot apex	3.554
	SRR3591709	Stem	6.126
	SRR3591710	White floral bud	74.148
	SRR3591711	White flower	3.806
	SRR3591712	Green floral bud	89.421
	SRR3591713	Yellow flower	2.269
SRP173429	SRR8316895	Juvenile bud stage	3.757
	SRR8316896	Juvenile bud stage	11.624
	SRR8316897	Juvenile bud stage	2.218
	SRR8316894	Third green stage	4.997
	SRR8316900	Third green stage	54.526
	SRR8316901	Third green stage	41.716
	SRR8316898	Complete white stage	0.287
	SRR8316899	Complete white stage	0.633
	SRR8316903	Complete white stage	0.248
	SRR8316902	Silver flowering stage	1.203
	SRR8316904	Silver flowering stage	2.028
	SRR8316905	Silver flowering stage	0.494
	SRR8316906	Gold flowering stage	0.028
	SRR8316907	Gold flowering stage	1.380
	SRR8316908	Gold flowering stage	0.698
SRP132670	SRR6706286	Control	34.533
	SRR6706287	Light intensity 50%	39.100
	SRR6706288	Light intensity 20%	34.148
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.510
	CNS0095593	Slightly white alabastrum(diploid) 2	18.963
	CNS0095594	Slightly white alabastrum(diploid) 3	22.546
	CNS0095595	Whole white alabastrum(diploid) 2	85.730
	CNS0095596	Whole white alabastrum(diploid) 3	93.504
	CNS0095597	Whole white alabastrum(diploid) 4	150.847
	CNS0095598	Silvery flower (diploied) 1	5.429
	CNS0095599	Silvery flower (diploied) 2	14.593
	CNS0095600	Silvery flower (diploied) 3	3.299
	CNS0095601	Golden flower (diploid) 1	4.243
	CNS0095602	Golden flower (diploid) 2	2.954
	CNS0095603	Golden flower (diploid) 3	2.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.216
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.627
	CNS0095607	Whole white alabastrum(tetraploid) 1	127.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	172.596
	CNS0095609	Whole white alabastrum(tetraploid) 3	70.480
	CNS0095610	Silvery flower (tetraploid) 1	1.137
	CNS0095611	Silvery flower (tetraploid) 2	6.157
	CNS0095612	Silvery flower (tetraploid) 3	15.539
	CNS0095613	Golden flower (tetraploid) 1	1.569
	CNS0095614	Golden flower (tetraploid) 2	0.968
	CNS0095615	Golden flower (tetraploid) 3	6.134
CRA001975	CRR073297	Stem 1	7.999
	CRR073298	Stem 2	8.281
	CRR073299	Stem 3	4.039
	CRR073300	Leaf 1	56.443
	CRR073301	Leaf 2	30.492
	CRR073302	Leaf 3	12.711
	CRR073303	Juvenile bud 1	59.606
	CRR073304	Juvenile bud 2	52.037
	CRR073305	Juvenile bud 3	3.745
	CRR073306	Third green 1	18.302
	CRR073307	Third green 2	17.934
	CRR073308	Third green 3	17.734
	CRR073309	Second white 1	1.132
	CRR073310	Second white 2	2.540
	CRR073311	Second white 3	4.547
	CRR073312	Silver flowering 1	14.774
	CRR073313	Silver flowering 2	13.689
	CRR073314	Silver flowering 3	8.614
	CRR073315	Gold flowering 1	26.911
	CRR073316	Gold flowering 2	17.449
	CRR073317	Gold flowering 3	10.619
	CRR073318	Tawny withering 1	36.968
	CRR073319	Tawny withering 2	21.363
	CRR073320	Tawny withering 3	43.699