Gene detail

Detail information of GWHGAAZE030715

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIX10772.1	0	glyceraldehyde-3-phosphate dehydrogenase [Panax notoginseng]
COG	YP_004042509.1	4E-166	glyceraldehyde-3-phosphate dehydrogenase
Swissprot	tr\|P25861\|G3PC_ANTMA	0	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
trEMBL	tr\|Q6RUQ2\|Q6RUQ2_DAUCA	0	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361160}
TAIR10	AT1G13440.1	5E-166	glyceraldehyde-3-phosphate dehydrogenase C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47577963	47581428	+
GWHAAZE00000009	mRNA	47577963	47581428	+
GWHAAZE00000009	exon	47577963	47577966	+
GWHAAZE00000009	exon	47578083	47578106	+
GWHAAZE00000009	exon	47578238	47578338	+
GWHAAZE00000009	exon	47578581	47578696	+
GWHAAZE00000009	exon	47578806	47578905	+
GWHAAZE00000009	exon	47579245	47579391	+
GWHAAZE00000009	exon	47579499	47579559	+
GWHAAZE00000009	exon	47579640	47579737	+
GWHAAZE00000009	exon	47579949	47580091	+
GWHAAZE00000009	exon	47580205	47580288	+
GWHAAZE00000009	exon	47580573	47580662	+
GWHAAZE00000009	exon	47581356	47581428	+
GWHAAZE00000009	CDS	47577963	47577966	+
GWHAAZE00000009	CDS	47578083	47578106	+
GWHAAZE00000009	CDS	47578238	47578338	+
GWHAAZE00000009	CDS	47578581	47578696	+
GWHAAZE00000009	CDS	47578806	47578905	+
GWHAAZE00000009	CDS	47579245	47579391	+
GWHAAZE00000009	CDS	47579499	47579559	+
GWHAAZE00000009	CDS	47579640	47579737	+
GWHAAZE00000009	CDS	47579949	47580091	+
GWHAAZE00000009	CDS	47580205	47580288	+
GWHAAZE00000009	CDS	47580573	47580662	+
GWHAAZE00000009	CDS	47581356	47581428	+

Transcript Sequence
>GWHTAAZE030749 ATGGGCAAGATCAAAATTGGAATCAACGGGTTTGGAAGGATTGGTAGGTTGGTGGCTAGAGTAGCTCTACAGAGAGACGATGTTGAGCTCGTCGCTGTTAACGATCCTTTCATCACGGTTGAATACATGACCTACATGTTCAAGTATGACAGTGTTCATGGTCAGTGGAAGCATCACGAACTCAAGGTTAAGGACAACAAGACCCTTCTCTTTGGCGAGAAACCAGTCTCTGTTTTTGGTTCCAGGAACCCAGAGGAGATTCCATGGGCAGAAACTGGAGCAGAGTTTATTGTTGAGTCAACCGGGGTGTTCACTGACAAGGATAAGGCTGCTGCTCATTTGAAGGGTGGTGCTAAAAAGGTCATCATCTCTGCTCCTAGTAAGGATGCACCTATGTTTGTTGTGGGTGTCAATGAAAAGGAGTACAAGTCCGATCTTCATATTGTTTCCAATGCCAGCTGCACCACAAACTGCCTTGCTCCTCTTGCAAAGGTGATTAATGACCGGTTCGGCATTGTTGAGGGACTTATGACTACTGTCCACTCTATTACTGCCACCCAGAAAACTGTTGATGGGCCATCAAGCAAGGACTGGAGGGGTGGAAGAGCTGCTTCTTTCAACATCATTCCTAGCAGCACAGGAGCTGCAAAGGCTGTTGGGAAAGTACTACCTGCATTAAATGGTAAATTGACCGGAATGGCATTCCGTGTCCCCACTGTAGATGTCTCAGTGGTTGATCTCACTGTGAGGTTGGAGAAGGCGGCTAGCTATGATGAAATTAAAGCTGCTATCAAGGAGGAGTCTGAAGGAAAGTTGAAAGGAATCTTAGGTTACACAGAAGATGACGTGGTTTCCACTGACTTTGTGGGTGACAGTAGGTCAAGCATATTTGATGCCAAGGCTGGGATAGCTCTGAATGAAAACTTTGTGAAGCTTGTTTCGTGGTACGACAATGAGTGGGGCTACAGGCGCGGTGATGGAAATGGTATCATGTTAGTAGGTGAGGAGGGATCTGACTCCTCCGAGTGTGTTGAGTCATAA

Network for GWHGAAZE030715

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00044.25	Gp_dh_N	4	107	4.90E-34
PF02800.21	Gp_dh_C	159	316	5.10E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00134	GAPDH, gapA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Carbon fixation in photosynthetic organisms	map00710
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006006	biological_process	glucose metabolic process
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661	molecular_function	NADP binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1912.794
	SRR3591706	second leaf	467.086
	SRR3591707	mature leaf	379.502
	SRR3591708	Shoot apex	808.804
	SRR3591709	Stem	1731.131
	SRR3591710	White floral bud	747.781
	SRR3591711	White flower	877.524
	SRR3591712	Green floral bud	872.909
	SRR3591713	Yellow flower	410.307
SRP173429	SRR8316895	Juvenile bud stage	735.605
	SRR8316896	Juvenile bud stage	885.063
	SRR8316897	Juvenile bud stage	401.736
	SRR8316894	Third green stage	426.483
	SRR8316900	Third green stage	1641.043
	SRR8316901	Third green stage	1430.660
	SRR8316898	Complete white stage	640.570
	SRR8316899	Complete white stage	1854.131
	SRR8316903	Complete white stage	843.090
	SRR8316902	Silver flowering stage	789.416
	SRR8316904	Silver flowering stage	743.041
	SRR8316905	Silver flowering stage	356.646
	SRR8316906	Gold flowering stage	971.187
	SRR8316907	Gold flowering stage	1495.204
	SRR8316908	Gold flowering stage	1073.504
SRP132670	SRR6706286	Control	1219.997
	SRR6706287	Light intensity 50%	1280.894
	SRR6706288	Light intensity 20%	1460.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	950.734
	CNS0095593	Slightly white alabastrum(diploid) 2	1222.734
	CNS0095594	Slightly white alabastrum(diploid) 3	832.831
	CNS0095595	Whole white alabastrum(diploid) 2	1000.059
	CNS0095596	Whole white alabastrum(diploid) 3	1042.656
	CNS0095597	Whole white alabastrum(diploid) 4	914.949
	CNS0095598	Silvery flower (diploied) 1	903.008
	CNS0095599	Silvery flower (diploied) 2	969.347
	CNS0095600	Silvery flower (diploied) 3	1411.840
	CNS0095601	Golden flower (diploid) 1	786.878
	CNS0095602	Golden flower (diploid) 2	1005.740
	CNS0095603	Golden flower (diploid) 3	1017.685
	CNS0095604	Slightly white alabastrum(tetraploid) 1	928.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	763.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1618.181
	CNS0095607	Whole white alabastrum(tetraploid) 1	552.499
	CNS0095608	Whole white alabastrum(tetraploid) 2	530.437
	CNS0095609	Whole white alabastrum(tetraploid) 3	1159.178
	CNS0095610	Silvery flower (tetraploid) 1	1627.462
	CNS0095611	Silvery flower (tetraploid) 2	1302.105
	CNS0095612	Silvery flower (tetraploid) 3	1078.995
	CNS0095613	Golden flower (tetraploid) 1	549.516
	CNS0095614	Golden flower (tetraploid) 2	979.721
	CNS0095615	Golden flower (tetraploid) 3	282.171
CRA001975	CRR073297	Stem 1	947.712
	CRR073298	Stem 2	943.563
	CRR073299	Stem 3	1203.625
	CRR073300	Leaf 1	1314.082
	CRR073301	Leaf 2	1342.698
	CRR073302	Leaf 3	1782.860
	CRR073303	Juvenile bud 1	2173.689
	CRR073304	Juvenile bud 2	1851.751
	CRR073305	Juvenile bud 3	2186.944
	CRR073306	Third green 1	1246.227
	CRR073307	Third green 2	1028.638
	CRR073308	Third green 3	921.217
	CRR073309	Second white 1	1203.735
	CRR073310	Second white 2	536.870
	CRR073311	Second white 3	339.720
	CRR073312	Silver flowering 1	328.638
	CRR073313	Silver flowering 2	499.734
	CRR073314	Silver flowering 3	390.417
	CRR073315	Gold flowering 1	552.227
	CRR073316	Gold flowering 2	571.207
	CRR073317	Gold flowering 3	621.113
	CRR073318	Tawny withering 1	1254.553
	CRR073319	Tawny withering 2	1023.259
	CRR073320	Tawny withering 3	1338.252