Detail information of GWHGAAZE030682


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI15119.33.87123E-64unnamed protein product [Vitis vinifera]
COGYP_003267833.13E-24RNP-1 like RNA-binding protein
Swissprottr|Q9FNR1|RBG3_ARATH7E-59Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBLtr|B9RLN6|B9RLN6_RICCO3E-64Glycine-rich RNA-binding protein, putative {ECO:0000313|EMBL:EEF47761.1}
TAIR10AT5G61030.11E-47glycine-rich RNA-binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4713515747136782-
GWHAAZE00000009mRNA4713515747136782-
GWHAAZE00000009exon4713664747136782-
GWHAAZE00000009exon4713649447136562-
GWHAAZE00000009exon4713589947136005-
GWHAAZE00000009exon4713515747135636-
GWHAAZE00000009CDS4713664747136782-
GWHAAZE00000009CDS4713649447136562-
GWHAAZE00000009CDS4713589947136005-
GWHAAZE00000009CDS4713515747135636-
Transcript Sequence

Network for GWHGAAZE030682

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1421102.80E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf123.627
SRR3591706second leaf51.860
SRR3591707mature leaf69.587
SRR3591708Shoot apex158.180
SRR3591709Stem85.320
SRR3591710White floral bud68.129
SRR3591711White flower111.533
SRR3591712Green floral bud112.337
SRR3591713Yellow flower78.485
SRP173429 SRR8316895Juvenile bud stage 69.882
SRR8316896Juvenile bud stage 97.313
SRR8316897Juvenile bud stage 46.451
SRR8316894Third green stage 38.931
SRR8316900Third green stage 121.013
SRR8316901Third green stage 120.555
SRR8316898Complete white stage 23.775
SRR8316899Complete white stage 91.794
SRR8316903Complete white stage 49.159
SRR8316902Silver flowering stage30.594
SRR8316904Silver flowering stage38.157
SRR8316905Silver flowering stage17.589
SRR8316906Gold flowering stage 62.828
SRR8316907Gold flowering stage 74.361
SRR8316908Gold flowering stage 76.650
SRP132670SRR6706286Control78.213
SRR6706287Light intensity 50%80.150
SRR6706288Light intensity 20%80.856
CNP0000432CNS0095592Slightly white alabastrum(diploid) 190.760
CNS0095593Slightly white alabastrum(diploid) 297.586
CNS0095594Slightly white alabastrum(diploid) 373.579
CNS0095595Whole white alabastrum(diploid) 277.477
CNS0095596Whole white alabastrum(diploid) 373.461
CNS0095597Whole white alabastrum(diploid) 458.682
CNS0095598Silvery flower (diploied) 163.583
CNS0095599Silvery flower (diploied) 254.375
CNS0095600Silvery flower (diploied) 354.137
CNS0095601Golden flower (diploid) 153.243
CNS0095602Golden flower (diploid) 246.957
CNS0095603Golden flower (diploid) 346.039
CNS0095604Slightly white alabastrum(tetraploid) 176.449
CNS0095605Slightly white alabastrum(tetraploid) 265.678
CNS0095606Slightly white alabastrum(tetraploid) 3157.883
CNS0095607Whole white alabastrum(tetraploid) 135.968
CNS0095608Whole white alabastrum(tetraploid) 237.747
CNS0095609Whole white alabastrum(tetraploid) 3116.088
CNS0095610Silvery flower (tetraploid) 189.521
CNS0095611Silvery flower (tetraploid) 249.241
CNS0095612Silvery flower (tetraploid) 342.054
CNS0095613Golden flower (tetraploid) 155.765
CNS0095614Golden flower (tetraploid) 270.857
CNS0095615Golden flower (tetraploid) 324.017
CRA001975CRR073297Stem 153.056
CRR073298Stem 255.403
CRR073299Stem 361.908
CRR073300Leaf 157.214
CRR073301Leaf 260.931
CRR073302Leaf 356.781
CRR073303Juvenile bud 161.391
CRR073304Juvenile bud 253.892
CRR073305Juvenile bud 363.633
CRR073306Third green 115.799
CRR073307Third green 212.718
CRR073308Third green 315.967
CRR073309Second white 122.526
CRR073310Second white 219.956
CRR073311Second white 39.760
CRR073312Silver flowering 117.171
CRR073313Silver flowering 220.125
CRR073314Silver flowering 313.974
CRR073315Gold flowering 137.234
CRR073316Gold flowering 253.869
CRR073317Gold flowering 337.221
CRR073318Tawny withering 147.727
CRR073319Tawny withering 235.815
CRR073320Tawny withering 343.537