Detail information of GWHGAAZE030673


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009761175.12.99E-169PREDICTED: SNAP25 homologous protein SNAP33 [Nicotiana sylvestris]
Swissprottr|Q9S7P9|SNP33_ARATH4E-138SNAP25 homologous protein SNAP33
trEMBLtr|A0A068VAA7|A0A068VAA7_COFCA3E-161Coffea canephora DH200=94 genomic scaffold, scaffold_164 {ECO:0000313|EMBL:CDP17499.1}
TAIR10AT5G61210.12E-103soluble N-ethylmaleimide-sensitive factor adaptor protein 33

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4692928446931732-
GWHAAZE00000009mRNA4692928446931732-
GWHAAZE00000009exon4693125646931732-
GWHAAZE00000009exon4693049246930585-
GWHAAZE00000009exon4693020146930331-
GWHAAZE00000009exon4692978646929883-
GWHAAZE00000009exon4692928446929693-
GWHAAZE00000009CDS4693125646931732-
GWHAAZE00000009CDS4693049246930585-
GWHAAZE00000009CDS4693020146930331-
GWHAAZE00000009CDS4692978646929883-
GWHAAZE00000009CDS4692959446929693-
GWHAAZE00000009three_prime_UTR4692928446929593-
Transcript Sequence

Network for GWHGAAZE030673

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18211SNAP25 Insulin secretion map04911
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.030
SRR3591706second leaf18.483
SRR3591707mature leaf24.710
SRR3591708Shoot apex19.583
SRR3591709Stem57.796
SRR3591710White floral bud38.595
SRR3591711White flower48.829
SRR3591712Green floral bud49.207
SRR3591713Yellow flower51.926
SRP173429 SRR8316895Juvenile bud stage 38.584
SRR8316896Juvenile bud stage 52.568
SRR8316897Juvenile bud stage 47.168
SRR8316894Third green stage 22.401
SRR8316900Third green stage 57.875
SRR8316901Third green stage 69.833
SRR8316898Complete white stage 25.371
SRR8316899Complete white stage 114.581
SRR8316903Complete white stage 33.825
SRR8316902Silver flowering stage24.236
SRR8316904Silver flowering stage22.078
SRR8316905Silver flowering stage14.254
SRR8316906Gold flowering stage 54.679
SRR8316907Gold flowering stage 42.212
SRR8316908Gold flowering stage 88.085
SRP132670SRR6706286Control18.757
SRR6706287Light intensity 50%30.336
SRR6706288Light intensity 20%31.383
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.955
CNS0095593Slightly white alabastrum(diploid) 264.350
CNS0095594Slightly white alabastrum(diploid) 342.169
CNS0095595Whole white alabastrum(diploid) 245.791
CNS0095596Whole white alabastrum(diploid) 326.431
CNS0095597Whole white alabastrum(diploid) 434.873
CNS0095598Silvery flower (diploied) 196.467
CNS0095599Silvery flower (diploied) 247.814
CNS0095600Silvery flower (diploied) 347.809
CNS0095601Golden flower (diploid) 170.992
CNS0095602Golden flower (diploid) 267.834
CNS0095603Golden flower (diploid) 366.958
CNS0095604Slightly white alabastrum(tetraploid) 117.952
CNS0095605Slightly white alabastrum(tetraploid) 218.443
CNS0095606Slightly white alabastrum(tetraploid) 331.884
CNS0095607Whole white alabastrum(tetraploid) 110.668
CNS0095608Whole white alabastrum(tetraploid) 215.198
CNS0095609Whole white alabastrum(tetraploid) 329.721
CNS0095610Silvery flower (tetraploid) 134.864
CNS0095611Silvery flower (tetraploid) 228.610
CNS0095612Silvery flower (tetraploid) 318.732
CNS0095613Golden flower (tetraploid) 137.287
CNS0095614Golden flower (tetraploid) 238.002
CNS0095615Golden flower (tetraploid) 326.036
CRA001975CRR073297Stem 122.968
CRR073298Stem 221.097
CRR073299Stem 322.569
CRR073300Leaf 139.047
CRR073301Leaf 243.274
CRR073302Leaf 335.231
CRR073303Juvenile bud 134.794
CRR073304Juvenile bud 244.294
CRR073305Juvenile bud 349.702
CRR073306Third green 130.273
CRR073307Third green 227.150
CRR073308Third green 324.757
CRR073309Second white 116.281
CRR073310Second white 217.153
CRR073311Second white 312.405
CRR073312Silver flowering 138.647
CRR073313Silver flowering 241.115
CRR073314Silver flowering 329.377
CRR073315Gold flowering 136.870
CRR073316Gold flowering 255.424
CRR073317Gold flowering 359.285
CRR073318Tawny withering 144.092
CRR073319Tawny withering 2109.054
CRR073320Tawny withering 353.319