Gene detail

Detail information of GWHGAAZE030669

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010258148.1	PREDICTED: heparanase-like protein 1 isoform X3 [Nelumbo nucifera]
Swissprot	tr\|Q9FF10\|HPSE1_ARATH	Heparanase-like protein 1 (Precursor)
trEMBL	tr\|A0A067K518\|A0A067K518_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP31311.1}
TAIR10	AT5G07830.1	glucuronidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46906465	46910129	+
GWHAAZE00000009	mRNA	46906465	46910129	+
GWHAAZE00000009	exon	46906465	46906674	+
GWHAAZE00000009	exon	46906771	46906807	+
GWHAAZE00000009	exon	46906983	46907166	+
GWHAAZE00000009	exon	46908216	46908364	+
GWHAAZE00000009	exon	46908464	46908697	+
GWHAAZE00000009	exon	46909040	46909229	+
GWHAAZE00000009	exon	46909318	46909443	+
GWHAAZE00000009	exon	46909555	46909654	+
GWHAAZE00000009	exon	46909737	46910129	+
GWHAAZE00000009	CDS	46906465	46906674	+
GWHAAZE00000009	CDS	46906771	46906807	+
GWHAAZE00000009	CDS	46906983	46907166	+
GWHAAZE00000009	CDS	46908216	46908364	+
GWHAAZE00000009	CDS	46908464	46908697	+
GWHAAZE00000009	CDS	46909040	46909229	+
GWHAAZE00000009	CDS	46909318	46909443	+
GWHAAZE00000009	CDS	46909555	46909654	+
GWHAAZE00000009	CDS	46909737	46910129	+

Transcript Sequence
>GWHTAAZE030703 ATGGGTTTCTGCACCTCATTATTCCTCCTCCTGGCATCTCTTTCTACAATCTTAGCTCAAGACGTAGAAGATGTGAAACTTATAGTCAATGCTACTGCAGTAGTTGCTGATACAGATCCTTATTTTATTTGTGCTACTATTGATTGGTGGCCTCATGATAAATGCGACTACAACCACTGCCCCTGGGGATATTCATCGGCGACAAATCTGGACTTATCTCATCCATTACTTGTCAAAGCTGTTCAAGCTTTCAAGCATTTGAGGATAAGAATCGGAGGTTCTTTACAAGACCAAGTAAAGTACAATGTAGGGAATTTGAAGTCTCCTTGCCATCCATTTGCAAAAATGAAGGATGGATTGTTTGGATTCTCAAAGGGATGTTTGCATATGAATCGGTGGGATGAACTGAACCACTTCTTCAGTAAAACAGGGGCACTTATGACATTTGGATTGAATGCACTACATGGGAGGCACCAGATTAAAAAGGGTGTTTGGGGAGGAGACTGGGATTCCATCAACGCCAATGATTTAATAAACTACACCGTTTCCAAGGGATACCAGATAGATTCATGGGAATTCGGCAATGAGTTAAGTGGCAAGGGGATTGGTGCTAGTGTTGGTGTTGAACAATACGGAAAAGATCTCATCAAACTTAAAGCTATGATTGAGAAGTTATACAAAAACTTCCATTCAAAACCTTTACTTGTAGCACCCGGAGGATTCTATGATAAGGAGTGGTTTGCTAAGCTCCTCAAGGTTTCAGGGTCAAATGTAGTCAATGTTATGACACATCATATATACAATTTGGGTGCAGGGATTGATCCTCATCTCGCGAAGAAAATTTTGGATCCCCATTACTTAAGTAGAGCATCGGAAACATTCAGCAATCTCAAACAAACAATTCAAACCAATGGTCCTTGGGCCTCTGCTTGGGTTGGAGAATCTGGTGGGGCCTATAACAGCGGAGGTCGCCATGTTTCTGACACCTTCATAAACAGCTTTTGGTACTTGGATCAACTTGGAATGGCGGCAAAGTACAATACTAAAGTATATTGCAGGCAGACTTTAATTGGTGGAAATTATGGTTTACTCAACACCACCACATTTGCGCCTAACCCTGATTATTATAGTGCACTTATGTGGCATCGGCTTATGGGACAAGGGGTTCTAGCTGTTGATAGTGACGCGTCACCGTTTTTGCGCTCTTATGCCCATTGTTCGAAAGGAAGAGCAGGGGTAACTTTACTTTTGATCAATTTAAGCAACCATACAGATTACAAGATCAATGTGGAGACAAGTACAGGCATCAACCCGCACGTGAAAGATAGAACCAGTAAGGGGGAGATCTCGTTTGCTCAAGGTCTTAAGAAAACAGTTTTATGGGTTGGAAGCAAATCAACAGACGAAGCCTTATCCCGTGAAGAGTACCATTTAACTCCGAAAGATGGGGATATTCGAAGCAAAACTATGATTTTAAACGGAAAGCAGGTAGAGCTCACAGATGGCGGAGATATCCCAGCTTTGGATTCTCTTCTCCTCGATGTAAACTCTCCAATATCCATTGCTCCTCTGTCCATTAAATTCATAGTATTTCCCAATTTCAATGCTCCAGGTTGCAAATGA

Network for GWHGAAZE030669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03662.15	Glyco_hydro_79n	25	341	6.50E-160

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07964	HPSE	Metabolic pathways	map01100
K07964	HPSE	Glycosaminoglycan degradation	map00531

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	145.998
	SRR3591706	second leaf	91.338
	SRR3591707	mature leaf	61.036
	SRR3591708	Shoot apex	91.280
	SRR3591709	Stem	186.439
	SRR3591710	White floral bud	89.784
	SRR3591711	White flower	81.101
	SRR3591712	Green floral bud	62.222
	SRR3591713	Yellow flower	62.846
SRP173429	SRR8316895	Juvenile bud stage	61.191
	SRR8316896	Juvenile bud stage	77.724
	SRR8316897	Juvenile bud stage	30.776
	SRR8316894	Third green stage	32.179
	SRR8316900	Third green stage	85.623
	SRR8316901	Third green stage	78.663
	SRR8316898	Complete white stage	54.939
	SRR8316899	Complete white stage	137.655
	SRR8316903	Complete white stage	73.695
	SRR8316902	Silver flowering stage	42.027
	SRR8316904	Silver flowering stage	75.390
	SRR8316905	Silver flowering stage	36.563
	SRR8316906	Gold flowering stage	81.910
	SRR8316907	Gold flowering stage	67.560
	SRR8316908	Gold flowering stage	67.680
SRP132670	SRR6706286	Control	73.088
	SRR6706287	Light intensity 50%	70.183
	SRR6706288	Light intensity 20%	70.322
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	65.439
	CNS0095593	Slightly white alabastrum(diploid) 2	75.910
	CNS0095594	Slightly white alabastrum(diploid) 3	57.624
	CNS0095595	Whole white alabastrum(diploid) 2	55.156
	CNS0095596	Whole white alabastrum(diploid) 3	46.460
	CNS0095597	Whole white alabastrum(diploid) 4	49.244
	CNS0095598	Silvery flower (diploied) 1	74.675
	CNS0095599	Silvery flower (diploied) 2	63.375
	CNS0095600	Silvery flower (diploied) 3	74.234
	CNS0095601	Golden flower (diploid) 1	58.742
	CNS0095602	Golden flower (diploid) 2	59.421
	CNS0095603	Golden flower (diploid) 3	55.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.097
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.586
	CNS0095606	Slightly white alabastrum(tetraploid) 3	126.745
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.329
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.970
	CNS0095610	Silvery flower (tetraploid) 1	68.780
	CNS0095611	Silvery flower (tetraploid) 2	59.274
	CNS0095612	Silvery flower (tetraploid) 3	65.034
	CNS0095613	Golden flower (tetraploid) 1	38.042
	CNS0095614	Golden flower (tetraploid) 2	48.456
	CNS0095615	Golden flower (tetraploid) 3	33.093
CRA001975	CRR073297	Stem 1	53.420
	CRR073298	Stem 2	50.511
	CRR073299	Stem 3	42.878
	CRR073300	Leaf 1	52.077
	CRR073301	Leaf 2	57.629
	CRR073302	Leaf 3	44.590
	CRR073303	Juvenile bud 1	52.359
	CRR073304	Juvenile bud 2	35.555
	CRR073305	Juvenile bud 3	52.624
	CRR073306	Third green 1	52.276
	CRR073307	Third green 2	48.712
	CRR073308	Third green 3	53.964
	CRR073309	Second white 1	19.472
	CRR073310	Second white 2	22.099
	CRR073311	Second white 3	13.089
	CRR073312	Silver flowering 1	10.712
	CRR073313	Silver flowering 2	8.082
	CRR073314	Silver flowering 3	10.416
	CRR073315	Gold flowering 1	34.233
	CRR073316	Gold flowering 2	53.086
	CRR073317	Gold flowering 3	26.387
	CRR073318	Tawny withering 1	51.220
	CRR073319	Tawny withering 2	52.253
	CRR073320	Tawny withering 3	63.789