Gene detail

Detail information of GWHGAAZE030661

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072816.1	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X2 [Sesamum indicum]
COG	YP_003371239.1	7E-25	serine/threonine protein kinase
Swissprot	tr\|F4I114\|Y1960_ARATH	3E-170	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|D7SI73\|D7SI73_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15183.3}
TAIR10	AT1G74330.2	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46797467	46801134	-
GWHAAZE00000009	mRNA	46797467	46801134	-
GWHAAZE00000009	exon	46797467	46797598	-
GWHAAZE00000009	exon	46797865	46798371	-
GWHAAZE00000009	exon	46799436	46799663	-
GWHAAZE00000009	exon	46799768	46800085	-
GWHAAZE00000009	exon	46800173	46800457	-
GWHAAZE00000009	exon	46800766	46801134	-
GWHAAZE00000009	CDS	46800766	46801134	-
GWHAAZE00000009	CDS	46800173	46800457	-
GWHAAZE00000009	CDS	46799768	46800085	-
GWHAAZE00000009	CDS	46799436	46799663	-
GWHAAZE00000009	CDS	46797865	46798371	-
GWHAAZE00000009	CDS	46797467	46797598	-

Transcript Sequence
>GWHTAAZE030695 ATGGGTTGTGTGACCTCGAAGCAGGCGGTTTCGGTGAACCCTGCTCTGGACCATTCCGCCACATTCGAGGACAATGCGGGTCTGGGTTCGGGTCGGAGCAGAGGTGGGTTGGTTGTGGAATTGGAGAATAACAAGAAGAAGAAGAAGAAGAAGAGAACCGGGTCCGGGTTGAGTGGGACTGAGTCAGGGCGGGCGAGTTCTAATGGTGTTGGTGGTGGGTCATTGAGTTTTAGGTTGGGGAATTTGCAGAAGTATGTGGAAGGAGAGCAAGTCGCCGCCGGTTGGCCGGCTTGGCTAAGTGCCGTCGCTGGTGAAGCCATTCATGGTTGGGTTCCCCTTAAAGCTGATTCTTTTGAGAAATTAGAGAAGGTCGGACAAGGTACATATAGCAGTGTATTCAGAGCGCGCGAACTAGAGAGTGGGAGGATAGTTGCTCTAAAGAAGGTCCGGTTCGACAATTTCGAGCCAGAAAGTGTTCGGTTCATGGCTCGAGAAATACAAATTCTCCGCCGACTTGACCATCCAAATATCATAAAGTTGGAGGGTCTAATTACCTCACGATTATCATCTAGCATGTACCTTGTGTTTGAGTACATGGAACACGATGTTTCTGGACTCTTATCTTCCCCCGACATCAAGTTCAGTGAATCACAGGTTAAATGCTATATGAAACAGTTATTATCTGGACTTGAGCACTGTCATTCACGAGGTGTAATGCATAGGGACATTAAAGGTGCAAATCTTCTAGTAAACAATGAAGGAGTTATGAAGGTTGCTGATTTTGGCTTAGCAAATTTCTGTAGTTCTGGGCAAAGGCAACCTCTAACGAGTCGGGTCGTCACTTTATGGTACCGTCCACCCGAATTGCTGTTGGGTTCTACCGATTATGGAGCTTCTGTGGATCTTTGGAGCGTGGGCTGTGTTTTTGCGGAACTTCTTGTTGGTGAACCTGTACTTCAGGGGAGAACCGAGGTTGAACAGTTGCACAAAATTTTCAAGCTCTGTGGGTCGCCACCTAATGATTACTGGAAAAAGTCTAAACTTCCTCATGCAACTCTGTTTAAACCACAGCATCCTTATGAAAGCTGTCTTTGGGAGACTTTCAAAGAGATACCGAAATCTGCTGTGAATATGATAGAAACTTTACTTTCTGTGGAACCAAACAAGCGAGGGACTGCCTCTTCTGCTCTTGCATCGGAGAATTTACCCGCCCGTACTCAAGTTTCCATCAAAATCAATGGAAACTCCGTAGATAAAGAAAAAAGTGATATCATATTACGCGTGGAGCCTCATAAGCCATCACTAGATGCAATCGAAGATGCGTCACATGGAGATGTTCCCTTTTCGGGTCCACTGCAAGTCTCTGGTTCAAGTGGATTTGCATGGGCAAAAAGGCGAATAGATGATTCATCTGTGAGATCGCGCAGTAGGTCTAGTTCAAAAAGTCTCGTTCTTGAACCTTCAAATGCATCTCATTTAGGGAATAATTGTGAGTCCAAATGTGGCGAAAATGTGGAAGTTGTACATGGAAACCGCACCAGTTCTAGAGGCCATGATTCGTATGAGATTGTTAAGCAAGCAATGATGAAAAGTTGGAGCCAATTGGAGGGTCCAGATTCTTTTGATGCCTCTGATGGGTACCACTCGCAGGAGCTGTCAATGACGGTTCATGAAAGAGAGGAGATGGCTGCCAGGAGAATTAATTTGATTTGTCAGGATCAAGAGGAGAAGGTTGAATTTTCAGGGCCCTTGTTATCTCATTCACACAGAGTTGATGAACTTTTGGAGAGGCACGAACGCTACATTCGACAGGCAGTTCGAAGAACATGGTTCCAAAGA

Network for GWHGAAZE030661

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	118	399	8.90E-70

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.366
	SRR3591706	second leaf	5.866
	SRR3591707	mature leaf	4.374
	SRR3591708	Shoot apex	8.823
	SRR3591709	Stem	14.619
	SRR3591710	White floral bud	1.953
	SRR3591711	White flower	1.156
	SRR3591712	Green floral bud	3.264
	SRR3591713	Yellow flower	0.350
SRP173429	SRR8316895	Juvenile bud stage	1.032
	SRR8316896	Juvenile bud stage	2.007
	SRR8316897	Juvenile bud stage	0.241
	SRR8316894	Third green stage	0.889
	SRR8316900	Third green stage	2.696
	SRR8316901	Third green stage	2.038
	SRR8316898	Complete white stage	0.147
	SRR8316899	Complete white stage	1.654
	SRR8316903	Complete white stage	0.998
	SRR8316902	Silver flowering stage	0.239
	SRR8316904	Silver flowering stage	2.168
	SRR8316905	Silver flowering stage	0.443
	SRR8316906	Gold flowering stage	0.478
	SRR8316907	Gold flowering stage	0.727
	SRR8316908	Gold flowering stage	1.247
SRP132670	SRR6706286	Control	3.504
	SRR6706287	Light intensity 50%	3.973
	SRR6706288	Light intensity 20%	3.808
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.697
	CNS0095593	Slightly white alabastrum(diploid) 2	2.730
	CNS0095594	Slightly white alabastrum(diploid) 3	1.295
	CNS0095595	Whole white alabastrum(diploid) 2	1.551
	CNS0095596	Whole white alabastrum(diploid) 3	2.260
	CNS0095597	Whole white alabastrum(diploid) 4	2.024
	CNS0095598	Silvery flower (diploied) 1	3.201
	CNS0095599	Silvery flower (diploied) 2	2.222
	CNS0095600	Silvery flower (diploied) 3	1.163
	CNS0095601	Golden flower (diploid) 1	2.046
	CNS0095602	Golden flower (diploid) 2	1.306
	CNS0095603	Golden flower (diploid) 3	1.706
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.411
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.103
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.971
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.441
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.934
	CNS0095610	Silvery flower (tetraploid) 1	0.882
	CNS0095611	Silvery flower (tetraploid) 2	1.146
	CNS0095612	Silvery flower (tetraploid) 3	0.899
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.885
	CNS0095615	Golden flower (tetraploid) 3	0.531
CRA001975	CRR073297	Stem 1	2.393
	CRR073298	Stem 2	2.170
	CRR073299	Stem 3	2.659
	CRR073300	Leaf 1	2.306
	CRR073301	Leaf 2	2.632
	CRR073302	Leaf 3	1.755
	CRR073303	Juvenile bud 1	1.169
	CRR073304	Juvenile bud 2	0.496
	CRR073305	Juvenile bud 3	1.048
	CRR073306	Third green 1	2.451
	CRR073307	Third green 2	3.304
	CRR073308	Third green 3	3.386
	CRR073309	Second white 1	1.011
	CRR073310	Second white 2	0.247
	CRR073311	Second white 3	0.240
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.047
	CRR073315	Gold flowering 1	2.487
	CRR073316	Gold flowering 2	2.887
	CRR073317	Gold flowering 3	3.192
	CRR073318	Tawny withering 1	16.604
	CRR073319	Tawny withering 2	8.413
	CRR073320	Tawny withering 3	20.081