Gene detail

Detail information of GWHGAAZE030654

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18314.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FLJ8\|Y5613_ARATH	0	Probable receptor-like protein kinase At5g61350 (Precursor)
trEMBL	tr\|A0A068VCP6\|A0A068VCP6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_223 {ECO:0000313\|EMBL:CDP18314.1}
TAIR10	AT5G61350.1	2E-148	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46735454	46737463	+
GWHAAZE00000009	mRNA	46735454	46737463	+
GWHAAZE00000009	exon	46735454	46736810	+
GWHAAZE00000009	exon	46737057	46737463	+
GWHAAZE00000009	CDS	46735454	46736810	+
GWHAAZE00000009	CDS	46737057	46737463	+

Transcript Sequence
>GWHTAAZE030688 ATGAAGAAATCTTTCGCATTCGTCAATGCTATCGAGCTTGTATCAGCTCCTGATGAACTTATTTCCGACTCTGCCTCTGCTGTTTCCCCTGTTGGAGCTTTCAATGGCATATCGAACTATGCTCTCGAAGTGTCTTACAGGTTAAATGTTGGAGGGCCAATTATCACTCCGAAAAATGATACATTGTCGAGGACATGGCAGCCCGATAACCAATTTATGGCCTTCTCGGAAGGGGCTAAAACCATCTCTATGGCTCCTGATATTATCAAATACCCAGAGGGCGGGGCCACTCCTTTCATTGCCCCTAATTGGGTTTACTCCACAGCTAAGGAGATGGCAGATTCGGGTGTGTCAGACCCGAATTTCAACATCACTTGGGAGATGAATGTTGATTCAAGTTTCTCTTACTTGATCAGGCTGCACTTTTGCGATATTGTAAGCACAAAGCTTGATGAGCTCTACTTCAATGTGTATGTTAATGGGATGATGGGTGCATCGAGCCTCGATCTCTCAACCCTCTCCTCAGGCCTCGCTGTCCCTTACTACAAGGACTTTGTGGTCAACGCCTCGGCCATCTCAAATGGGTCCATAACTGTTCAGGTTGGGCCGTGCTCAAATGTTCAGCCAATTATTCCAAATGCTATTCTCAATGGCTTGGAGGTCATGAAGATGAGCAATTCCGACGGATCGTTAGACGGGTTGTTCTCATCCGGTGGGGCTAACCAGGCCCCGATTATAAAACCAACTACATTGAAAATTGCTGAAATATTCGGTCTGGTAATGGGAGTGTCGGCAATATTGTTGCTTGTAACGAGCATCATTAGGTGGAAACGGAGCCCTCAAGATTGGGAGAAACGAGGCAGCTTCTCTTCATGGCTTCTTCCTCTTAACTCGGGCCAATGTAGCTTCTTGTCGAGGAAGAGCAAGATCAGTTACTCTAGCATTTTCGTCTCCGGGCCAAGCCTTGGCCGATTCTTCACTTTCAACGAACTAAAGGATGCCACAAGAAATTTCGATGAAAATGAAGTGATCGGCGTTGGGGGATTCGGTAAAGTGTACATTGGAGAGTTGGAAGATGGAATAAAGGTTGCCATAAAACGAGGAAATGCGAGTTCTTCACAAGGCATAAATGAATTCCAGACGGAAATACAAATGCTATCGAAGCTCCGCCATCGCCACCTTGTTTCACTTATCGGCTATTGTGACGAACAATCCGAAATGATCCTAGTCTACGAGTACATGTCCAATGGCCCATTCCGGGACCACCTCTATGGTTCGACGCTGCCTCCATTAACATGGAGGCAACGGCTCGATATATGCATTGGTGCTGCTCGTGGTTTACATTACCTCCACACCGCAAGGCCGGCCCTGGACCCCACATTGCCGAGGGAGCAGGTGAATTTGGCTGAGTGGGCGATGAAGAAGAATAAGAAGGGTTTGATCGAGAAGATTATCGACCCTCGGATTGTTGGGAGTATAAGCTCAGAGTCGTTGATGAAGTATGTGGAGACTGCAGAGAAGTGTTTGGGGGAGTATGGTGTTGATAGGCCTTCAATGGGGGATGTGTTGTGGAACTTGGAGTTTACTTTGCAGCTTCAAGAGGCATCTTCACAGCTTGATCCCCCTGATGAGAAAAATGGAGAAAAGATCATTGATGTGGAAGAAAGAAGAGACGAGGAGCAAAATATTGTAGTCAGTGATGATTCTGGTCTGGTGGTTGCCTCTCCTTTGTTTTCAAATTTTGAAGAGTTTCAAGGAAGATGA

Network for GWHGAAZE030654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	3	223	3.60E-28
PF07714.18	PK_Tyr_Ser-Thr	341	452	4.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.597
	SRR3591706	second leaf	0.259
	SRR3591707	mature leaf	0.094
	SRR3591708	Shoot apex	1.350
	SRR3591709	Stem	0.978
	SRR3591710	White floral bud	1.218
	SRR3591711	White flower	3.482
	SRR3591712	Green floral bud	1.467
	SRR3591713	Yellow flower	1.674
SRP173429	SRR8316895	Juvenile bud stage	5.889
	SRR8316896	Juvenile bud stage	6.153
	SRR8316897	Juvenile bud stage	3.807
	SRR8316894	Third green stage	0.872
	SRR8316900	Third green stage	0.374
	SRR8316901	Third green stage	1.077
	SRR8316898	Complete white stage	0.031
	SRR8316899	Complete white stage	1.220
	SRR8316903	Complete white stage	0.255
	SRR8316902	Silver flowering stage	1.058
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.095
	SRR8316906	Gold flowering stage	0.648
	SRR8316907	Gold flowering stage	0.532
	SRR8316908	Gold flowering stage	1.053
SRP132670	SRR6706286	Control	0.762
	SRR6706287	Light intensity 50%	2.243
	SRR6706288	Light intensity 20%	1.563
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.753
	CNS0095593	Slightly white alabastrum(diploid) 2	1.684
	CNS0095594	Slightly white alabastrum(diploid) 3	2.198
	CNS0095595	Whole white alabastrum(diploid) 2	1.073
	CNS0095596	Whole white alabastrum(diploid) 3	0.166
	CNS0095597	Whole white alabastrum(diploid) 4	1.186
	CNS0095598	Silvery flower (diploied) 1	1.515
	CNS0095599	Silvery flower (diploied) 2	1.460
	CNS0095600	Silvery flower (diploied) 3	2.375
	CNS0095601	Golden flower (diploid) 1	1.238
	CNS0095602	Golden flower (diploid) 2	1.810
	CNS0095603	Golden flower (diploid) 3	1.362
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.523
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.227
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.808
	CNS0095610	Silvery flower (tetraploid) 1	1.193
	CNS0095611	Silvery flower (tetraploid) 2	1.103
	CNS0095612	Silvery flower (tetraploid) 3	1.516
	CNS0095613	Golden flower (tetraploid) 1	0.766
	CNS0095614	Golden flower (tetraploid) 2	1.085
	CNS0095615	Golden flower (tetraploid) 3	0.330
CRA001975	CRR073297	Stem 1	1.743
	CRR073298	Stem 2	1.905
	CRR073299	Stem 3	1.905
	CRR073300	Leaf 1	1.752
	CRR073301	Leaf 2	1.778
	CRR073302	Leaf 3	0.663
	CRR073303	Juvenile bud 1	0.399
	CRR073304	Juvenile bud 2	0.771
	CRR073305	Juvenile bud 3	1.738
	CRR073306	Third green 1	14.933
	CRR073307	Third green 2	7.295
	CRR073308	Third green 3	12.355
	CRR073309	Second white 1	3.978
	CRR073310	Second white 2	3.255
	CRR073311	Second white 3	2.900
	CRR073312	Silver flowering 1	8.086
	CRR073313	Silver flowering 2	10.995
	CRR073314	Silver flowering 3	3.434
	CRR073315	Gold flowering 1	2.876
	CRR073316	Gold flowering 2	3.684
	CRR073317	Gold flowering 3	0.556
	CRR073318	Tawny withering 1	2.458
	CRR073319	Tawny withering 2	1.098
	CRR073320	Tawny withering 3	2.877