Gene detail

Detail information of GWHGAAZE030649

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17743.1	0	unnamed protein product [Coffea canephora]
COG	NP_809437.1	9E-12	two-component system response regulator
Swissprot	tr\|Q9LKL2\|APRR1_ARATH	1E-141	Two-component response regulator-like APRR1
trEMBL	tr\|A0A068VDJ9\|A0A068VDJ9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_178 {ECO:0000313\|EMBL:CDP17743.1}
TAIR10	AT5G61380.1	1E-112	CCT motif -containing response regulator protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46677531	46681363	+
GWHAAZE00000009	mRNA	46677531	46681363	+
GWHAAZE00000009	exon	46677531	46677720	+
GWHAAZE00000009	exon	46678556	46678717	+
GWHAAZE00000009	exon	46678821	46678954	+
GWHAAZE00000009	exon	46679061	46679228	+
GWHAAZE00000009	exon	46679416	46679512	+
GWHAAZE00000009	exon	46680615	46681363	+
GWHAAZE00000009	CDS	46677531	46677720	+
GWHAAZE00000009	CDS	46678556	46678717	+
GWHAAZE00000009	CDS	46678821	46678954	+
GWHAAZE00000009	CDS	46679061	46679228	+
GWHAAZE00000009	CDS	46679416	46679512	+
GWHAAZE00000009	CDS	46680615	46681363	+

Transcript Sequence
>GWHTAAZE030683 ATGGACCGCCGGAATGAAATAGTTTTGAGCAAAGATGGGGGCGAGGGCAGGGGCGGCGGCTGTCTTAGAAATATTAGTAAGGGCTGTGATGGGTTTATTGATCGCAGTAAAGTGAGAATTTTGCTTTGCGACAATGATTCCAAGAGTTCAGATGAAGTTTTTAAGCTTCTATGCGGATGCTCATATCAAGTAACTCCAGTGAGATCACCTCGCCAAGTGATTGATGCACTGAATGCTGAGGGGCCTGACATAGATATCATTCTGTCTGAAGTTGACCTGCCTATGGCAAAAGGCTTGAAGATGTTAAAATACATTATGAGGGATAAAGGATTACGACGGATTCCAGTGATAATGATGTCAGCACAGGATGAGGTCTCTGTTGTCGTCAAGTGCTTGAGACTTGGTGCTGCTGACTATTTGGTGAAGCCCTTAAGAACCAATGAGCTCTTGAATTTATGGACTCACATGTGGAGAAGGCGGCGAATGCTGGGACTTGAAGAAAAGAACATCTTGAGTTACGACTTTGATCTGGTGGCATCAGAACCCAGTGATGCTAATACAAACAGCACTACTCTGTTCTCAGATGACACAGATGACAAGTCGAGGAAGAGTGCCAATCCCGAGACATGTGTGTCAGCTCCTCAGCGAGATGAGATGGATGCTGCTATTACTGCTGCTCCTACAGAGTTGGCAACTGTGGATTTACCCAAATATTGGCCCGATGTGCTTGCAACTAGCCAATGGAGAAGAGGGCAAATTTCATCTTTCCCCAAAAAGAGTGAACTAAAAATAGGCGAGTCTTCAGCCTTCTTTACATATGTCAAATCAAGCATGCTCAAAATCGACACTGAGGGAGTTATCCCTGTCAATGTGAATACTCGTCAGCACTTGAGGATCGAAAAGAAACTTAGTTCACGGGGTGGGCAGGAAAATATCAATACCCAAGGAAATGCAAGCAAAGAGGTACAGGAAAACCATGAGAAACGAAATGACTTCCCAAGCAGTAAAAGCGTACCTGATTCTATCTATATAGAGAGATCTTGTACTCCCCCTCCGCCTCAACTGGCAGAATTCTCACAGCAAAGGAACTCAAAGATGGAAGAGTTCTGTCAGATTTATACACAACCGAGAAATGACAACACCAATCATAATGTCTCAAGTTTTAACGCACATGCTCCTTATCCATATTATATCTCTGGAGTAATGAATCAACAATATATGATGTCTTCTCAACAGAACCACCACATTCCCTCGACTGTGTTACCTCAATACAATCATATTCCGCATTATCCTCATATGGCGCCGTTTCCCTATTATCCATGGCCACCAGGGCAAATGCCTGCGGAGCAGCAGCCATATCCGCCTACGCCGCCGCCGCCGCATGGGAGTTCATCTTCCAATACCGGGAACTTAAGTAAAGTTGATCGCAGAGAGGCAGCCTTGATCAAGTTCAGGCAGAAGAGAAAGGAGCGTTGCTTTGACAAGAAGATTAGGTATTAA

Network for GWHGAAZE030649

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	40	151	5.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K12127	TOC1, APRR1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.141
	SRR3591706	second leaf	4.955
	SRR3591707	mature leaf	5.639
	SRR3591708	Shoot apex	14.731
	SRR3591709	Stem	21.320
	SRR3591710	White floral bud	56.604
	SRR3591711	White flower	70.370
	SRR3591712	Green floral bud	34.442
	SRR3591713	Yellow flower	39.043
SRP173429	SRR8316895	Juvenile bud stage	9.794
	SRR8316896	Juvenile bud stage	14.726
	SRR8316897	Juvenile bud stage	5.497
	SRR8316894	Third green stage	7.166
	SRR8316900	Third green stage	15.914
	SRR8316901	Third green stage	15.236
	SRR8316898	Complete white stage	9.590
	SRR8316899	Complete white stage	31.952
	SRR8316903	Complete white stage	19.003
	SRR8316902	Silver flowering stage	19.661
	SRR8316904	Silver flowering stage	30.079
	SRR8316905	Silver flowering stage	13.896
	SRR8316906	Gold flowering stage	29.745
	SRR8316907	Gold flowering stage	28.355
	SRR8316908	Gold flowering stage	39.618
SRP132670	SRR6706286	Control	13.225
	SRR6706287	Light intensity 50%	11.932
	SRR6706288	Light intensity 20%	12.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.500
	CNS0095593	Slightly white alabastrum(diploid) 2	6.260
	CNS0095594	Slightly white alabastrum(diploid) 3	5.959
	CNS0095595	Whole white alabastrum(diploid) 2	6.883
	CNS0095596	Whole white alabastrum(diploid) 3	6.169
	CNS0095597	Whole white alabastrum(diploid) 4	7.448
	CNS0095598	Silvery flower (diploied) 1	23.940
	CNS0095599	Silvery flower (diploied) 2	14.241
	CNS0095600	Silvery flower (diploied) 3	45.969
	CNS0095601	Golden flower (diploid) 1	18.895
	CNS0095602	Golden flower (diploid) 2	45.128
	CNS0095603	Golden flower (diploid) 3	46.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.187
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.638
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.117
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.913
	CNS0095610	Silvery flower (tetraploid) 1	49.775
	CNS0095611	Silvery flower (tetraploid) 2	79.251
	CNS0095612	Silvery flower (tetraploid) 3	88.203
	CNS0095613	Golden flower (tetraploid) 1	33.793
	CNS0095614	Golden flower (tetraploid) 2	45.167
	CNS0095615	Golden flower (tetraploid) 3	70.524
CRA001975	CRR073297	Stem 1	57.209
	CRR073298	Stem 2	49.148
	CRR073299	Stem 3	49.026
	CRR073300	Leaf 1	38.832
	CRR073301	Leaf 2	37.001
	CRR073302	Leaf 3	31.446
	CRR073303	Juvenile bud 1	34.046
	CRR073304	Juvenile bud 2	28.259
	CRR073305	Juvenile bud 3	42.254
	CRR073306	Third green 1	22.959
	CRR073307	Third green 2	19.705
	CRR073308	Third green 3	23.020
	CRR073309	Second white 1	30.094
	CRR073310	Second white 2	29.532
	CRR073311	Second white 3	34.277
	CRR073312	Silver flowering 1	37.389
	CRR073313	Silver flowering 2	26.117
	CRR073314	Silver flowering 3	36.926
	CRR073315	Gold flowering 1	46.901
	CRR073316	Gold flowering 2	54.677
	CRR073317	Gold flowering 3	36.884
	CRR073318	Tawny withering 1	50.766
	CRR073319	Tawny withering 2	36.014
	CRR073320	Tawny withering 3	59.224