Gene detail

Detail information of GWHGAAZE030643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15200.3	1.0437E-157	unnamed protein product [Vitis vinifera]
COG	NP_484825.1	1E-109	ribulose-phosphate 3-epimerase
Swissprot	tr\|Q43157\|RPE_SPIOL	4E-158	Ribulose-phosphate 3-epimerase, chloroplastic (Precursor)
trEMBL	tr\|F6GT65\|F6GT65_VITVI	1E-157	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43074.1}
TAIR10	AT5G61410.2	2E-125	D-ribulose-5-phosphate-3-epimerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46613772	46615773	+
GWHAAZE00000009	mRNA	46613772	46615773	+
GWHAAZE00000009	exon	46613772	46613900	+
GWHAAZE00000009	exon	46614050	46614190	+
GWHAAZE00000009	exon	46614284	46614397	+
GWHAAZE00000009	exon	46614548	46614626	+
GWHAAZE00000009	exon	46614929	46615038	+
GWHAAZE00000009	exon	46615135	46615191	+
GWHAAZE00000009	exon	46615669	46615773	+
GWHAAZE00000009	CDS	46613772	46613900	+
GWHAAZE00000009	CDS	46614050	46614190	+
GWHAAZE00000009	CDS	46614284	46614397	+
GWHAAZE00000009	CDS	46614548	46614626	+
GWHAAZE00000009	CDS	46614929	46615038	+
GWHAAZE00000009	CDS	46615135	46615191	+
GWHAAZE00000009	CDS	46615669	46615773	+

Transcript Sequence
>GWHTAAZE030677 ATGTATGAATCCAGGAGAAATTTCCGAACTGTTGTGAAGGCTTCTTCTCGGGTTGATAAGTTCTCGAAGAGTGACATCATTGTTTCTCCATCTATCCTCTCAGCCAATTTTGCAAAGTTGGGAGAGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGGTTTGTACCAAATATAACAATTGGACCTCTAGTTGTTGATGCCTTGAGACCTGTGACTGATCTCCCATTGGATGTGCATCTGATGATTGTCGAACCCGAGCAGCGAGTGCCTGATTTCATTAAGGCTGGAGCAGACATAGTCAGTGTCCATTGTGAGCAAACTGCCACCATCCATTTGCACCGGACGCTTAATGAAATAAAAAATCTGGGAGCCAAAGCTGGCGTTGTCTTGAACCCTGGAACCCCACTCAGCACTATAGAATATGTTCTTGATGTGGTTGATCTGATCTTGATTATGTCGGTAAACCCTGGATTCGGTGGGCAAAGCTTCATTGAGAGTCAAGTTAAAAAAATCTCGGACTTAAGAAAAATTTGTGCAGAGAAGGGGGTGAACCCATGGATCGAGGTAGATGGTGGAGTTACTCCTAAAAATGCCTATAAGGTTATTGAAGCTGGGGCCAATGCTTTGGTAGCCGGTTCAGCTGTCTTTGGAGCCAAGGATTATGCTGAAGGCATGCTCATCAAACTTACAGCAGCAACTCTATAA

Network for GWHGAAZE030643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00834.20	Ribul_P_3_epim	28	226	2.10E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01783	rpe, RPE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Pentose and glucuronate interconversions	map00040
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0003824	molecular_function	catalytic activity
GO:0016857	molecular_function	racemase and epimerase activity, acting on carbohydrates and derivatives
GO:0004750	molecular_function	ribulose-phosphate 3-epimerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	194.746
	SRR3591706	second leaf	655.327
	SRR3591707	mature leaf	804.179
	SRR3591708	Shoot apex	188.916
	SRR3591709	Stem	198.896
	SRR3591710	White floral bud	168.608
	SRR3591711	White flower	258.220
	SRR3591712	Green floral bud	93.904
	SRR3591713	Yellow flower	290.887
SRP173429	SRR8316895	Juvenile bud stage	146.679
	SRR8316896	Juvenile bud stage	161.541
	SRR8316897	Juvenile bud stage	108.389
	SRR8316894	Third green stage	53.995
	SRR8316900	Third green stage	170.583
	SRR8316901	Third green stage	159.896
	SRR8316898	Complete white stage	130.164
	SRR8316899	Complete white stage	231.602
	SRR8316903	Complete white stage	166.293
	SRR8316902	Silver flowering stage	193.235
	SRR8316904	Silver flowering stage	252.548
	SRR8316905	Silver flowering stage	140.027
	SRR8316906	Gold flowering stage	505.843
	SRR8316907	Gold flowering stage	409.592
	SRR8316908	Gold flowering stage	477.762
SRP132670	SRR6706286	Control	145.030
	SRR6706287	Light intensity 50%	143.396
	SRR6706288	Light intensity 20%	147.277
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	90.204
	CNS0095593	Slightly white alabastrum(diploid) 2	71.593
	CNS0095594	Slightly white alabastrum(diploid) 3	78.206
	CNS0095595	Whole white alabastrum(diploid) 2	78.622
	CNS0095596	Whole white alabastrum(diploid) 3	66.176
	CNS0095597	Whole white alabastrum(diploid) 4	63.315
	CNS0095598	Silvery flower (diploied) 1	213.121
	CNS0095599	Silvery flower (diploied) 2	214.381
	CNS0095600	Silvery flower (diploied) 3	402.166
	CNS0095601	Golden flower (diploid) 1	218.551
	CNS0095602	Golden flower (diploid) 2	347.073
	CNS0095603	Golden flower (diploid) 3	339.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	89.399
	CNS0095605	Slightly white alabastrum(tetraploid) 2	86.887
	CNS0095606	Slightly white alabastrum(tetraploid) 3	140.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.078
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.762
	CNS0095609	Whole white alabastrum(tetraploid) 3	130.584
	CNS0095610	Silvery flower (tetraploid) 1	416.164
	CNS0095611	Silvery flower (tetraploid) 2	461.986
	CNS0095612	Silvery flower (tetraploid) 3	454.303
	CNS0095613	Golden flower (tetraploid) 1	404.667
	CNS0095614	Golden flower (tetraploid) 2	476.172
	CNS0095615	Golden flower (tetraploid) 3	763.186
CRA001975	CRR073297	Stem 1	174.255
	CRR073298	Stem 2	132.309
	CRR073299	Stem 3	208.254
	CRR073300	Leaf 1	91.696
	CRR073301	Leaf 2	91.437
	CRR073302	Leaf 3	115.399
	CRR073303	Juvenile bud 1	147.553
	CRR073304	Juvenile bud 2	157.959
	CRR073305	Juvenile bud 3	123.248
	CRR073306	Third green 1	253.598
	CRR073307	Third green 2	191.843
	CRR073308	Third green 3	204.497
	CRR073309	Second white 1	574.021
	CRR073310	Second white 2	438.565
	CRR073311	Second white 3	389.231
	CRR073312	Silver flowering 1	417.312
	CRR073313	Silver flowering 2	389.929
	CRR073314	Silver flowering 3	360.106
	CRR073315	Gold flowering 1	1018.306
	CRR073316	Gold flowering 2	1174.619
	CRR073317	Gold flowering 3	853.948
	CRR073318	Tawny withering 1	127.369
	CRR073319	Tawny withering 2	134.442
	CRR073320	Tawny withering 3	126.912