Gene detail

Detail information of GWHGAAZE030641

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037404.1	2.1075E-165	NAC domain protein, IPR003441 [Theobroma cacao]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	4E-141	NAC domain-containing protein 100
trEMBL	tr\|A0A061FWI7\|A0A061FWI7_THECC	8E-166	NAC domain protein, IPR003441 {ECO:0000313\|EMBL:EOY21905.1}
TAIR10	AT5G61430.1	5E-114	NAC domain containing protein 100

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46584584	46585825	+
GWHAAZE00000009	mRNA	46584584	46585825	+
GWHAAZE00000009	exon	46584584	46584770	+
GWHAAZE00000009	exon	46584863	46585140	+
GWHAAZE00000009	exon	46585253	46585825	+
GWHAAZE00000009	CDS	46584584	46584770	+
GWHAAZE00000009	CDS	46584863	46585140	+
GWHAAZE00000009	CDS	46585253	46585825	+

Transcript Sequence
>GWHTAAZE030675 ATGGAGAACTTCAGTGGGATTGCTATGGAGGGGGATCGTATTGAATTGCCTCCGGGATTTCGATTCCATCCGTCCGATGAGGAGCTGATTACTCATTATTTATCCAAGAAAGTTCTCGATTGCAATTTCTCAGCTAGAGCTATTGGTGAGGTAGATATGAACAAGGTTGAGCCCTGGGAATTGCCATTGAAGGCGAAAATGGGGGAGAAGGAATGGTATTTTTTCTGTGTGAGGGATAAGAAATACCCTACAGGATTGAGGACAAACAGGGCCACTGCTGCTGGATACTGGAAAGCAACCGGAAAAGATAAGGAAATTTTCAGAGAAAAATCCCTGGTTGGGATGAAGAAAACCCTAGTTTTCTACAAGGGGAGAGCTCCAAAAGGAGAGAAAAGCAATTGGGTCATTCATGAATATAGATTGGAGGGTAAATTATCCCTCCACAATCTACCCAAAACAGCGAAGAATGAGTGGGTGATTTGTAGGGTATTTCAGAAGAGTTCTGGGGGTAAGAAGGTGCATATTTCTGGGCTAGTGAGATTGAATTCAATTGGAAATGATATGGGTCCATCTCTGCTACCACCATTAATGGACTCTTCTAATTACTCTCCAAGTACTAAACCCGAATCACTTCACGTGCCCTGCTTCTCCAATTCCATTGGTATTCAAAAAACCCAGAAACAAATTATTGACTATTTAAGCAATCCGAATTACCCGTTTTTCTGTTCGAATCCATCGGTTAATTTCCCAAGAATTTCACTTCCAAACCCATTTCCTTTTGTTCAATCCGCTCCTTTTCAGGGGAACTTGCAGTACTCAGGCCCAGTTCAAATGCAAGGGAATTCAATTCCAAATGGGTTGGTTGAAAATTATGATCCAAACATGACACAAAGCCTCAAAACAGAGAAAGGAATGGTAAGCACTGGTGTGAACAGAGGAATTTCAAATCTGGAAATTGGAAGGAGGTCGTTTGAGGATCTAGCAGCACCATCAGTTTCTGTGGGACAATTGGACTTTGATTGTCTTTGGAATTATTGA

Network for GWHGAAZE030641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	17	141	6.80E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.218
	SRR3591706	second leaf	5.303
	SRR3591707	mature leaf	9.643
	SRR3591708	Shoot apex	4.179
	SRR3591709	Stem	5.330
	SRR3591710	White floral bud	27.363
	SRR3591711	White flower	89.512
	SRR3591712	Green floral bud	13.846
	SRR3591713	Yellow flower	104.709
SRP173429	SRR8316895	Juvenile bud stage	1.260
	SRR8316896	Juvenile bud stage	3.736
	SRR8316897	Juvenile bud stage	0.874
	SRR8316894	Third green stage	2.616
	SRR8316900	Third green stage	3.249
	SRR8316901	Third green stage	4.956
	SRR8316898	Complete white stage	6.503
	SRR8316899	Complete white stage	2.940
	SRR8316903	Complete white stage	10.041
	SRR8316902	Silver flowering stage	24.990
	SRR8316904	Silver flowering stage	23.163
	SRR8316905	Silver flowering stage	11.601
	SRR8316906	Gold flowering stage	40.042
	SRR8316907	Gold flowering stage	48.733
	SRR8316908	Gold flowering stage	54.887
SRP132670	SRR6706286	Control	3.051
	SRR6706287	Light intensity 50%	2.591
	SRR6706288	Light intensity 20%	1.685
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.758
	CNS0095593	Slightly white alabastrum(diploid) 2	3.025
	CNS0095594	Slightly white alabastrum(diploid) 3	4.871
	CNS0095595	Whole white alabastrum(diploid) 2	1.486
	CNS0095596	Whole white alabastrum(diploid) 3	1.430
	CNS0095597	Whole white alabastrum(diploid) 4	3.622
	CNS0095598	Silvery flower (diploied) 1	12.626
	CNS0095599	Silvery flower (diploied) 2	13.370
	CNS0095600	Silvery flower (diploied) 3	37.157
	CNS0095601	Golden flower (diploid) 1	12.927
	CNS0095602	Golden flower (diploid) 2	53.927
	CNS0095603	Golden flower (diploid) 3	52.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.809
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.050
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.026
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.892
	CNS0095610	Silvery flower (tetraploid) 1	30.185
	CNS0095611	Silvery flower (tetraploid) 2	22.888
	CNS0095612	Silvery flower (tetraploid) 3	13.290
	CNS0095613	Golden flower (tetraploid) 1	26.003
	CNS0095614	Golden flower (tetraploid) 2	37.384
	CNS0095615	Golden flower (tetraploid) 3	36.070
CRA001975	CRR073297	Stem 1	0.495
	CRR073298	Stem 2	0.913
	CRR073299	Stem 3	0.667
	CRR073300	Leaf 1	0.742
	CRR073301	Leaf 2	0.409
	CRR073302	Leaf 3	0.024
	CRR073303	Juvenile bud 1	0.241
	CRR073304	Juvenile bud 2	0.840
	CRR073305	Juvenile bud 3	0.295
	CRR073306	Third green 1	0.910
	CRR073307	Third green 2	1.638
	CRR073308	Third green 3	1.498
	CRR073309	Second white 1	0.678
	CRR073310	Second white 2	2.075
	CRR073311	Second white 3	4.079
	CRR073312	Silver flowering 1	2.567
	CRR073313	Silver flowering 2	0.811
	CRR073314	Silver flowering 3	0.664
	CRR073315	Gold flowering 1	1.177
	CRR073316	Gold flowering 2	1.495
	CRR073317	Gold flowering 3	0.122
	CRR073318	Tawny withering 1	11.646
	CRR073319	Tawny withering 2	10.052
	CRR073320	Tawny withering 3	4.797