Detail information of GWHGAAZE030578


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009617134.16.03453E-58PREDICTED: transcription factor MYB1R1-like [Nicotiana tomentosiformis]
Swissprottr|Q2V9B0|MY1R1_SOLTU3E-53Transcription factor MYB1R1
trEMBLtr|A5C7A7|A5C7A7_VITVI5E-56Putative uncharacterized protein {ECO:0000313|EMBL:CAN77681.1}
TAIR10AT1G74840.28E-35Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4558687845587504+
GWHAAZE00000009mRNA4558687845587504+
GWHAAZE00000009exon4558687845587067+
GWHAAZE00000009exon4558723045587504+
GWHAAZE00000009CDS4558687845587067+
GWHAAZE00000009CDS4558723045587504+
Transcript Sequence

Network for GWHGAAZE030578

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding661101.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf81.146
SRR3591706second leaf34.762
SRR3591707mature leaf93.331
SRR3591708Shoot apex59.984
SRR3591709Stem157.721
SRR3591710White floral bud22.963
SRR3591711White flower37.508
SRR3591712Green floral bud5.982
SRR3591713Yellow flower25.064
SRP173429 SRR8316895Juvenile bud stage 8.124
SRR8316896Juvenile bud stage 11.501
SRR8316897Juvenile bud stage 6.338
SRR8316894Third green stage 3.722
SRR8316900Third green stage 9.083
SRR8316901Third green stage 12.168
SRR8316898Complete white stage 26.427
SRR8316899Complete white stage 55.742
SRR8316903Complete white stage 40.507
SRR8316902Silver flowering stage18.026
SRR8316904Silver flowering stage23.099
SRR8316905Silver flowering stage14.371
SRR8316906Gold flowering stage 33.725
SRR8316907Gold flowering stage 43.445
SRR8316908Gold flowering stage 57.219
SRP132670SRR6706286Control29.971
SRR6706287Light intensity 50%24.886
SRR6706288Light intensity 20%19.562
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.517
CNS0095593Slightly white alabastrum(diploid) 28.984
CNS0095594Slightly white alabastrum(diploid) 310.191
CNS0095595Whole white alabastrum(diploid) 210.697
CNS0095596Whole white alabastrum(diploid) 37.360
CNS0095597Whole white alabastrum(diploid) 47.992
CNS0095598Silvery flower (diploied) 139.243
CNS0095599Silvery flower (diploied) 228.421
CNS0095600Silvery flower (diploied) 341.967
CNS0095601Golden flower (diploid) 141.704
CNS0095602Golden flower (diploid) 258.865
CNS0095603Golden flower (diploid) 354.702
CNS0095604Slightly white alabastrum(tetraploid) 18.620
CNS0095605Slightly white alabastrum(tetraploid) 28.760
CNS0095606Slightly white alabastrum(tetraploid) 323.303
CNS0095607Whole white alabastrum(tetraploid) 15.330
CNS0095608Whole white alabastrum(tetraploid) 24.841
CNS0095609Whole white alabastrum(tetraploid) 312.466
CNS0095610Silvery flower (tetraploid) 161.532
CNS0095611Silvery flower (tetraploid) 262.077
CNS0095612Silvery flower (tetraploid) 323.169
CNS0095613Golden flower (tetraploid) 130.748
CNS0095614Golden flower (tetraploid) 280.702
CNS0095615Golden flower (tetraploid) 348.303
CRA001975CRR073297Stem 124.381
CRR073298Stem 223.556
CRR073299Stem 323.635
CRR073300Leaf 113.942
CRR073301Leaf 221.800
CRR073302Leaf 311.775
CRR073303Juvenile bud 112.757
CRR073304Juvenile bud 226.521
CRR073305Juvenile bud 319.835
CRR073306Third green 131.688
CRR073307Third green 229.696
CRR073308Third green 335.435
CRR073309Second white 110.073
CRR073310Second white 27.691
CRR073311Second white 36.933
CRR073312Silver flowering 11.996
CRR073313Silver flowering 25.719
CRR073314Silver flowering 310.599
CRR073315Gold flowering 133.683
CRR073316Gold flowering 248.639
CRR073317Gold flowering 342.038
CRR073318Tawny withering 158.432
CRR073319Tawny withering 245.367
CRR073320Tawny withering 357.487