Gene detail

Detail information of GWHGAAZE030563

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010091045.1	3.9027E-133	Protein ROS1 [Morus notabilis]
COG	YP_001545170.1	1E-36	DNA-(apurinic or apyrimidinic site) lyase
Swissprot	tr\|Q9SJQ6\|ROS1_ARATH	2E-16	Protein ROS1
trEMBL	tr\|W9R8X4\|W9R8X4_9ROSA	1E-133	Protein ROS1 {ECO:0000313\|EMBL:EXB42063.1}
TAIR10	AT3G47830.1	9E-91	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45382366	45384396	-
GWHAAZE00000009	mRNA	45382366	45384396	-
GWHAAZE00000009	exon	45382366	45382617	-
GWHAAZE00000009	exon	45382693	45382749	-
GWHAAZE00000009	exon	45382965	45383165	-
GWHAAZE00000009	exon	45383998	45384396	-
GWHAAZE00000009	CDS	45383998	45384396	-
GWHAAZE00000009	CDS	45382965	45383165	-
GWHAAZE00000009	CDS	45382693	45382749	-
GWHAAZE00000009	CDS	45382366	45382617	-

Transcript Sequence
>GWHTAAZE030597 ATGCAGAAACGCGGGAAGAGAAAACACGCTGAGCTCCGGGTGCTATCGTCGCCGGCGATTCAATCTCCGGCTAAGTCCACCATACCCAGCGCCATCGTTAACATCATAAATGAGCCATATCCAGAGTACCCTAGACCCACCCCAGAAGAATGCCTATTCGTACGAGACGACCTCATGTCACTCCACGGTTTCCCCAAACAATTCGCCAAGTACCAGCGCAAACAACAAAATTCCTCGAAATCTGAGCCCCCGGGCGGAGAAGACGATGGGGGGTCCCCTTGTCCGATCGAAAGTGTGTTGGATGGTCTAGTGAGCACCATATTGTCGCAGAACACGACCGAAACCAACTCTCAAAGGGCTTTTGCTTCTCTCAAATCTGCTTTCCCCAATTGGGAAGATGTTCTTGGGGCAGAGTCGAAGTGCATAGAGGATGCGATAAGATGTGGAGGTCTAGCACCAACAAAAGCTTCTTGTATTAAGAATATGCTGAATTGTTTGTTGGAGAGAAAGGGAAAGTTATGTTTGGAGTACTTGCGAGACTTGTCAATTGATGAAATCAAGTCCGAGCTCTCTCATTTCAAAGGAATTGGGCCTAAAACGGTTGCATGTGTATTGATGTTTAATCTTCAGCTAGATGATTTCCCAGTGGACACACACATTTTTCATATAGCAAAGGCCATCGGTTGGGTCCCACCGGTCTCCGACACGCAAAAGACATATCTTCATCTAAATCAGCGGATACCAAATGAATTAAAATTCGACCTCAACTGTCTATTGTATACCCATGGTAAGGTCTGTCAAAATTGCACCAAGAAAGGCAGTAAGCAGAAGAAAAAGGTTGCCAATGTTGACTCTTGCCCTTTACTGCATTACTGCAAAACACAAAATGAAAATGAAACAATCAAGTGA

Network for GWHGAAZE030563

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00730.26	HhH-GPD	104	247	3.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10773	NTH	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006284	biological_process	base-excision repair
GO:0006281	biological_process	DNA repair
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.953
	SRR3591706	second leaf	3.866
	SRR3591707	mature leaf	3.376
	SRR3591708	Shoot apex	10.445
	SRR3591709	Stem	2.718
	SRR3591710	White floral bud	3.101
	SRR3591711	White flower	4.973
	SRR3591712	Green floral bud	4.354
	SRR3591713	Yellow flower	2.317
SRP173429	SRR8316895	Juvenile bud stage	8.137
	SRR8316896	Juvenile bud stage	10.697
	SRR8316897	Juvenile bud stage	5.939
	SRR8316894	Third green stage	3.258
	SRR8316900	Third green stage	7.428
	SRR8316901	Third green stage	8.333
	SRR8316898	Complete white stage	1.417
	SRR8316899	Complete white stage	12.165
	SRR8316903	Complete white stage	3.271
	SRR8316902	Silver flowering stage	1.076
	SRR8316904	Silver flowering stage	1.937
	SRR8316905	Silver flowering stage	0.873
	SRR8316906	Gold flowering stage	3.423
	SRR8316907	Gold flowering stage	3.154
	SRR8316908	Gold flowering stage	4.206
SRP132670	SRR6706286	Control	6.770
	SRR6706287	Light intensity 50%	7.039
	SRR6706288	Light intensity 20%	7.326
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.432
	CNS0095593	Slightly white alabastrum(diploid) 2	9.119
	CNS0095594	Slightly white alabastrum(diploid) 3	11.692
	CNS0095595	Whole white alabastrum(diploid) 2	9.614
	CNS0095596	Whole white alabastrum(diploid) 3	9.485
	CNS0095597	Whole white alabastrum(diploid) 4	8.403
	CNS0095598	Silvery flower (diploied) 1	9.483
	CNS0095599	Silvery flower (diploied) 2	7.920
	CNS0095600	Silvery flower (diploied) 3	4.646
	CNS0095601	Golden flower (diploid) 1	10.175
	CNS0095602	Golden flower (diploid) 2	5.610
	CNS0095603	Golden flower (diploid) 3	6.668
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.751
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.678
	CNS0095610	Silvery flower (tetraploid) 1	2.332
	CNS0095611	Silvery flower (tetraploid) 2	2.511
	CNS0095612	Silvery flower (tetraploid) 3	1.209
	CNS0095613	Golden flower (tetraploid) 1	0.976
	CNS0095614	Golden flower (tetraploid) 2	2.303
	CNS0095615	Golden flower (tetraploid) 3	0.536
CRA001975	CRR073297	Stem 1	11.699
	CRR073298	Stem 2	10.526
	CRR073299	Stem 3	9.568
	CRR073300	Leaf 1	9.346
	CRR073301	Leaf 2	7.938
	CRR073302	Leaf 3	10.946
	CRR073303	Juvenile bud 1	8.632
	CRR073304	Juvenile bud 2	3.704
	CRR073305	Juvenile bud 3	5.889
	CRR073306	Third green 1	1.014
	CRR073307	Third green 2	0.389
	CRR073308	Third green 3	1.338
	CRR073309	Second white 1	1.126
	CRR073310	Second white 2	1.576
	CRR073311	Second white 3	2.067
	CRR073312	Silver flowering 1	2.290
	CRR073313	Silver flowering 2	1.863
	CRR073314	Silver flowering 3	0.982
	CRR073315	Gold flowering 1	7.819
	CRR073316	Gold flowering 2	11.530
	CRR073317	Gold flowering 3	8.423
	CRR073318	Tawny withering 1	10.528
	CRR073319	Tawny withering 2	10.243
	CRR073320	Tawny withering 3	8.992