Gene detail

Detail information of GWHGAAZE030553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15072.3	0	unnamed protein product [Vitis vinifera]
trEMBL	tr\|M1C9S1\|M1C9S1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400062912}
TAIR10	AT3G48050.2	4E-151	BAH domain ;TFIIS helical bundle-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45201164	45209092	-
GWHAAZE00000009	mRNA	45201164	45209092	-
GWHAAZE00000009	exon	45209021	45209092	-
GWHAAZE00000009	exon	45205139	45205510	-
GWHAAZE00000009	exon	45201164	45204946	-
GWHAAZE00000009	CDS	45209021	45209092	-
GWHAAZE00000009	CDS	45205139	45205510	-
GWHAAZE00000009	CDS	45201164	45204946	-

Transcript Sequence
>GWHTAAZE030587 ATGAGGTCGGTCCCCACGACGAGGACTTTACCCGGCGATTCTTTAGCTTCTACTTCTGATTCCTTCTTCAAGGACGGTCGCAGAATTAGCGTTGGTGACTGTGCTCTTTTCAAACCGCCCCAGAGTGATCTCCCTTTCATCGGAATAATCCGTCAGTTATCATCCAGTAAAGACAATAATTTACTGTTAGGCGTAAATTGGCTTTATCGACCATCTGAAGTAAAACTTGGCAAAGGCATCCTGCTGGACGCTGCGCCAAACGAAATCTTCTATTCATTCCATAAGGATGAGATTCCAGCTGCATCCTTACTCCATCCGTGTAAAGTTGCATTCCTTCCCAAAGGTGTTGAACTTTCTCCAGGGTTATCCTCTTTTGTGTGCCGCCAAGTTTACGACATTGCAAACAACTGTTTGTGGTGTTTAACAGACCAAGATTATATTGATGAGCAACAGCAAGAAGTAGATCAGCTTTTGTACAAAACAAGAATAGAGATGCATGCTACAGTGCAGCCTGGTGGCCGTTCGCCAAAACCGTTAAGCGTTAATACATCAACTTCACAGTTAAAGCCTACTTCCGATAATGTACAAAGTAGTTCAAGTTCTTTCCCTTCCCAAGTTAAGCGAAAGAAAAGGGAGCAGAGAGATCAGGGATCTGAGCCTTCCAAACGAGAACGTTCTTCAAAATCAGATGACAGTGACTCTAGTCAGTTCAAAGCAGAAAGCATATTGAAATCTGAGATAGCTAAAATAACTGAAAAAGGAGGTCTTATGAACTCTGAAGGGGTTGAGAAATTGGTGCAACTGATGCAACCAAATAGAGAGGAGAGGAAGATGGATTTGGTTAGCCGGTCAATGCTTGCAGGTGTGATAGCAGCTACAGATAGGTTTGACTGCCTAAGTTGGTTTGTGCAGCTCAGGGGTTTGCCTGTATTAGATGAATGGCTCCAAGACATCCACAGGGGGAAAATCGGTGATGGTAGTAGTATCCTTAAGAATGGTGATAAATCTGTTGAGGAATTCCTCTTGGTTTTACTTCGTGCACTTGATAAGCTACCAGTAAATCTCCATGCTCTACAAATGTGTAATATTGGAAAATCGGTAAATCATTTGCGTACAAATAAAAATCTTGAAATTCAGAGGAAGGCCAGGAGTTTAGTTGACACCTGGAAGAAACGTGTTGAGGCTGAAATGAACAGTATTGATTCAAAGTCAGGCTCTTCTCAGCCTGTTTCTTGGTCTTCTAAGTCCCGTCTTCCCGAGGTTTCTCATGGCGGGACCAGACACCCTGCAGGCCCCTCTGAGATTGCTACGAAGAGCTCGGTCACACATATTTCTGCAACTAAAACTTCTTCACTCAAGCCTGTGCGTGGAGAAACTACTACAATGTCTGCATCCTCTTCTCCGAGGACAATGAAAGCAGCAGTATCACCTGGATTGGGTAGGGATGGTCACCCCAGAATTTCAGTTGGCGGTGGAGGTTCTTTTGAAGATCGTTCTGTCTTGAACGGAAGAGCTGCTTCTCCTGTTCTTTCGGAGAAACATGATCAATCTGTTAATGATTCAAAAGAAGGTGAGGGTCATCGAGCTAATGTTACGTCTGATGTGAATGCTCAGTCCTGGCAAAGCAATGACATCAACGATTTATTGACTGGATCTGATGTAGGTGATGGGTCACCCGATGCTGTTCATGATGAAGAACGGAGTAAGATGGCTGACGACACTAGGAAATCCAGTGAAGTCTCTAAAGCTGGTTCCTTGTCATCTGAAAATGAGCTGGAATCAGGAAAATTGGAAGTGCTCAAATTAGCTGACGAGGCTTCTTTCTGTACCCTACGCTCTCTAATTGAAACCTGTGTCAAATACTCTGAAGCAAATGCATCTTTGTCAGTCGGGGACGATGTTGGAATGGAACTGCTTGCTAGCGTGGCTGCTGGCGAGGTATCCAAGTCGGATCGGGCATCGCCAAATGATTCTCCACAGAGAAATAAACCTGTAGTTAAGGATACTTGTATTGCTAATGATGACAGATCAAAATTATCACCTACAGACATACTCGCACTAGGCCAGAGTCAACCTGATATTGAGAAGCAGGGCACTGTTGCTGGTACTTCCGGGTCTAAGGGCGGATTAGATTTGTGCGAGCGTTCATTAGCCGATTTCTCCGGGGACAGAAGAATCACATATTTGTCATCTGAAGCATCAGCACGCAATTCTTGCAATATGGATCTGCAACCAGCTGCAGATCCATTTGTTAAGACCTGTGAAAAGTCGGCTGCTACTTCCATGGCTGCGGCCCCTTCCATCATGCCAGTAAGCAATAGAGAGGAAAATGCAGTTATTAACAACACAAGTCTTGATGGCAGTCCAGAAATTAAACCGAGGGGGTGCACTCCTTTGTTAACCAAAGATAAAGTCAATGATCTCCCTGGAAGTGTGGCAGACAAGAAGCAAGCTGTTGAAATTTCACCATCATCCCATCTATTAGAAAATGAGGGTGAGAACATTATGGATGGAGGGCTTGCAGGTGGTGGTAATGCAGAGCAGAACCCACCTACAGTGAGGATGAAAACCGAGCACGTAGATGAAATGGATGAAAAATTTTTGCATTCTTCAAATTCTGTTAAAAATTTGGTTCCGGAAGAAGCCAAAGTCAGAAAAACTGAAGAGTTGGACACAAGGAGATCTGTTAATCGGGCTGAAAAACAATTTGGTCAGGAAACTGACAATGTTAAAGATATTGTAAATCAAGGAGTAGGTTGTGTTGGTTCAGCTATTACCAATCAGAGAAGCGAGTGTGCGGATGAGAACATTGATGGTGCAGAGGTTCGGGAGCAACCTTCTGGTGGAATAGTTCCTCATAGAGACTCACCTGCACCTACTTCCCAAGGGATGGAACTTCATGGGAGGTTAAGGGAGTCCAAAGTAACTGCTGCTGAAGCAGTAGAAACAGAGGAATGTGCATCAACAACAGCAGATATTTCTCGGTTCTCAGCTTCGGCGCCACCACATATGGATGCAAAAGTGAAATTCGATCTGAACGAAGGCTTTGTTGTGGATGATGGTAAATTTGGAGAGCCATTTAATAAATCGACAGCTCCTCCTGCGTATCAATCAGTTCACGTGATGAACCAATTGCCTTTTCCTGTTTCTTCGGTCTCCAGCAGCCTTCCTGCTTCCGTTACAGTTGCTGCTGCGGCAAAAAGGCCCTTTCTTCCTCCAGAGGATCTACTGAGGTGTAAAGGGGAACTTGGTTGGACGGGGTCAGCTGCAACTAGTGCATTTCGACCAGCCGAACCCCGAAAGGTTCCAGAGTTGCCCTTTGTTACGACTAACATCCCTATACCTGATGCTACTGCAAGCAGACCTGGGCGCCCTCTTTTGGATATTGATCTGAATGCACCAGGTGAAGGAGTTCTTGATGACGTGGCTTCTCAAGACACATCTTTTAATTGTGATTTGGCACCTGCTCGTGGCTTTGGGGGGCTTGGTCTTGATTTGAACCAAGCTGATGAGGCTAATGATATGGAGCAGTATTCGATAAGCAGCAGTCGTGGATTGGAGTTCCCTCTCCTGTCAGTTAAATCATCATCATCAGGTGGTGAGGTGCGTAGGGTCTTTGATTTAAATAATGGACCTGCCCTTGAAGATGTGAGTGCTGAACCTTTATTTAACCGGCATGGCGGTGGCAGTGTGCAACCGCAGCAGCCACAGGTTGGTGGCATCAGAGTAAATCGTGCAGAAGTAGGGAACTTTTCGTCATGGTTTGCTCCTCCTGGGAACAACACTGGCCCAGCAGTTGGGCTGCCATCAATCTTGTCCAATAGAGGGGAGAAGCCCTTTCCTGTATTTGCACCTGGTGGTGCACAACAAAGAATATTGGGTCCTCCAACCGGTGGTGGTTCCCATTTTACTCCGGACGTATATTGGGGCTCAGTATTGTCATCATCTCCTACCGTGCCCTTTCCCTCAACTCCCTTCCAGTATCCGGTGGTCCCCTATATGACCAGTTTTCCTCTGCCTTCTTCCACTTTATCTGGTGGGTCAGCCACTTATGTGGACTCATCATCTGGTGGGAGGATCTGTTTCCCTGCCATTAATAATAATTCACAGTTGCAAGGTGGACCTGGTGCAGTAGGTTCATCTCAATACCCACGGCCTTACATGGTTAGTAGCCTACAAGACGGTAGCAGCAATGGTGTTGTTTTGGAGAACAATCGAAAATGGGCA

Network for GWHGAAZE030553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	29	132	6.90E-10
PF08711.12	Med26	344	393	4.00E-10

Protein Sequence

>GWHPAAZE030571
MRSVPTTRTLPGDSLASTSDSFFKDGRRISVGDCALFKPPQSDLPFIGIIRQLSSSKDNNLLLGVNWLYRPSEVKLGKGILLDAAPNEIFYSFHKDEIPAASLLHPCKVAFLPKGVELSPGLSSFVCRQVYDIANNCLWCLTDQDYIDEQQQEVDQLLYKTRIEMHATVQPGGRSPKPLSVNTSTSQLKPTSDNVQSSSSSFPSQVKRKKREQRDQGSEPSKRERSSKSDDSDSSQFKAESILKSEIAKITEKGGLMNSEGVEKLVQLMQPNREERKMDLVSRSMLAGVIAATDRFDCLSWFVQLRGLPVLDEWLQDIHRGKIGDGSSILKNGDKSVEEFLLVLLRALDKLPVNLHALQMCNIGKSVNHLRTNKNLEIQRKARSLVDTWKKRVEAEMNSIDSKSGSSQPVSWSSKSRLPEVSHGGTRHPAGPSEIATKSSVTHISATKTSSLKPVRGETTTMSASSSPRTMKAAVSPGLGRDGHPRISVGGGGSFEDRSVLNGRAASPVLSEKHDQSVNDSKEGEGHRANVTSDVNAQSWQSNDINDLLTGSDVGDGSPDAVHDEERSKMADDTRKSSEVSKAGSLSSENELESGKLEVLKLADEASFCTLRSLIETCVKYSEANASLSVGDDVGMELLASVAAGEVSKSDRASPNDSPQRNKPVVKDTCIANDDRSKLSPTDILALGQSQPDIEKQGTVAGTSGSKGGLDLCERSLADFSGDRRITYLSSEASARNSCNMDLQPAADPFVKTCEKSAATSMAAAPSIMPVSNREENAVINNTSLDGSPEIKPRGCTPLLTKDKVNDLPGSVADKKQAVEISPSSHLLENEGENIMDGGLAGGGNAEQNPPTVRMKTEHVDEMDEKFLHSSNSVKNLVPEEAKVRKTEELDTRRSVNRAEKQFGQETDNVKDIVNQGVGCVGSAITNQRSECADENIDGAEVREQPSGGIVPHRDSPAPTSQGMELHGRLRESKVTAAEAVETEECASTTADISRFSASAPPHMDAKVKFDLNEGFVVDDGKFGEPFNKSTAPPAYQSVHVMNQLPFPVSSVSSSLPASVTVAAAAKRPFLPPEDLLRCKGELGWTGSAATSAFRPAEPRKVPELPFVTTNIPIPDATASRPGRPLLDIDLNAPGEGVLDDVASQDTSFNCDLAPARGFGGLGLDLNQADEANDMEQYSISSSRGLEFPLLSVKSSSSGGEVRRVFDLNNGPALEDVSAEPLFNRHGGGSVQPQQPQVGGIRVNRAEVGNFSSWFAPPGNNTGPAVGLPSILSNRGEKPFPVFAPGGAQQRILGPPTGGGSHFTPDVYWGSVLSSSPTVPFPSTPFQYPVVPYMTSFPLPSSTLSGGSATYVDSSSGGRICFPAINNNSQLQGGPGAVGSSQYPRPYMVSSLQDGSSNGVVLENNRKWA

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.122
	SRR3591706	second leaf	12.488
	SRR3591707	mature leaf	15.831
	SRR3591708	Shoot apex	17.452
	SRR3591709	Stem	21.617
	SRR3591710	White floral bud	28.892
	SRR3591711	White flower	34.392
	SRR3591712	Green floral bud	23.708
	SRR3591713	Yellow flower	28.714
SRP173429	SRR8316895	Juvenile bud stage	13.209
	SRR8316896	Juvenile bud stage	18.542
	SRR8316897	Juvenile bud stage	7.742
	SRR8316894	Third green stage	7.278
	SRR8316900	Third green stage	17.220
	SRR8316901	Third green stage	17.537
	SRR8316898	Complete white stage	8.204
	SRR8316899	Complete white stage	26.546
	SRR8316903	Complete white stage	17.439
	SRR8316902	Silver flowering stage	11.271
	SRR8316904	Silver flowering stage	16.831
	SRR8316905	Silver flowering stage	8.150
	SRR8316906	Gold flowering stage	28.757
	SRR8316907	Gold flowering stage	23.169
	SRR8316908	Gold flowering stage	28.806
SRP132670	SRR6706286	Control	22.175
	SRR6706287	Light intensity 50%	22.396
	SRR6706288	Light intensity 20%	22.940
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.103
	CNS0095593	Slightly white alabastrum(diploid) 2	8.687
	CNS0095594	Slightly white alabastrum(diploid) 3	7.041
	CNS0095595	Whole white alabastrum(diploid) 2	9.989
	CNS0095596	Whole white alabastrum(diploid) 3	7.002
	CNS0095597	Whole white alabastrum(diploid) 4	8.580
	CNS0095598	Silvery flower (diploied) 1	14.447
	CNS0095599	Silvery flower (diploied) 2	13.763
	CNS0095600	Silvery flower (diploied) 3	38.030
	CNS0095601	Golden flower (diploid) 1	15.167
	CNS0095602	Golden flower (diploid) 2	41.075
	CNS0095603	Golden flower (diploid) 3	40.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.845
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.771
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.868
	CNS0095610	Silvery flower (tetraploid) 1	34.324
	CNS0095611	Silvery flower (tetraploid) 2	33.659
	CNS0095612	Silvery flower (tetraploid) 3	41.326
	CNS0095613	Golden flower (tetraploid) 1	18.880
	CNS0095614	Golden flower (tetraploid) 2	31.428
	CNS0095615	Golden flower (tetraploid) 3	49.341
CRA001975	CRR073297	Stem 1	28.116
	CRR073298	Stem 2	25.649
	CRR073299	Stem 3	26.650
	CRR073300	Leaf 1	27.919
	CRR073301	Leaf 2	23.955
	CRR073302	Leaf 3	23.077
	CRR073303	Juvenile bud 1	22.523
	CRR073304	Juvenile bud 2	24.134
	CRR073305	Juvenile bud 3	38.740
	CRR073306	Third green 1	31.134
	CRR073307	Third green 2	20.385
	CRR073308	Third green 3	27.892
	CRR073309	Second white 1	31.554
	CRR073310	Second white 2	34.163
	CRR073311	Second white 3	50.641
	CRR073312	Silver flowering 1	50.942
	CRR073313	Silver flowering 2	54.738
	CRR073314	Silver flowering 3	44.087
	CRR073315	Gold flowering 1	12.161
	CRR073316	Gold flowering 2	22.545
	CRR073317	Gold flowering 3	19.563
	CRR073318	Tawny withering 1	25.766
	CRR073319	Tawny withering 2	18.982
	CRR073320	Tawny withering 3	19.448