Gene detail

Detail information of GWHGAAZE030551

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010318920.1	4.1599E-142	PREDICTED: rac-like GTP-binding protein 3 isoform X2 [Solanum lycopersicum]
COG	YP_003319433.1	2E-11	small GTP-binding protein
Swissprot	tr\|Q6Z808\|RAC3_ORYSJ	1E-133	Rac-like GTP-binding protein 3
trEMBL	tr\|Q8GT44\|Q8GT44_TOBAC	2E-142	Putative rac protein {ECO:0000313\|EMBL:CAD42725.1}
TAIR10	AT5G62880.1	1E-96	RAC-like 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45158232	45162303	+
GWHAAZE00000009	mRNA	45158232	45162303	+
GWHAAZE00000009	exon	45158232	45158336	+
GWHAAZE00000009	exon	45158869	45158956	+
GWHAAZE00000009	exon	45159093	45159202	+
GWHAAZE00000009	exon	45159298	45159361	+
GWHAAZE00000009	exon	45160211	45160275	+
GWHAAZE00000009	exon	45160363	45160428	+
GWHAAZE00000009	exon	45161523	45161617	+
GWHAAZE00000009	exon	45162120	45162303	+
GWHAAZE00000009	CDS	45158232	45158336	+
GWHAAZE00000009	CDS	45158869	45158956	+
GWHAAZE00000009	CDS	45159093	45159202	+
GWHAAZE00000009	CDS	45159298	45159361	+
GWHAAZE00000009	CDS	45160211	45160275	+
GWHAAZE00000009	CDS	45160363	45160428	+
GWHAAZE00000009	CDS	45161523	45161617	+
GWHAAZE00000009	CDS	45162120	45162303	+

Transcript Sequence
>GWHTAAZE030585 ATGGCATCAAGCGCTTCAAGGTTCATAAAATGTGTAACAGTTGGTGATGGTGCTGTTGGCAAGACTTGTATGCTTATCTGCTATACCAGTAACAAATTCCCCACTGACTACATACCAACAGTGTTTGATAACTTCAGTGCAAATGTGGTTGTTGAAGGCACCACTGTCAACTTAGGCCTCTGGGACACAGCTGGTCAAGAGGATTATAACAGATTGAGGCCATTAAGCTACCGAGGGGCAGATGTGTTCGTTCTAGCTTTCTCCCTAGTTAGTCGTGCAAGCTACGAGAACATACTTAAGAAGTGGATCCCTGAACTTCAGCATTATGCCCCCGGAGTTCCAGTTGTACTGGCTGGCACCAAACTGGATCTTCGTGAGGATAAGCACTATTTGGCTGACCATCCTGGATTAGTGCCTGTGACCACTGCACAGGGAGAGGAGCTTCGTAAACAGATTGGCGCTGCATATTATATTGAATGCAGCTCTAAAACGCAACAGAATGTGAAAGCAGTGTTTGATGCTGCAATCAAGGTCGTTATCAAGCCACCACAAAAACAAAAGGAGAAGAAAAAGCCACGCCGAGGATGTCTAGTCCTCTTGGATTTGGTCACTAAGGAATCTGAAAACGTGCCTTTGAATGTGATCTTAAGGGAATTTGGTTGCAGCTTATTCTGGGAGGAGGGAGGAACTTCGAGCCTTCCAACAGTAGGAAGAATCAAATTTAACTTGGATAAGATCTCTTTGGAAATTTTAGTGAGCAACCAGCAGCAAAATTAG

Network for GWHGAAZE030551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	10	179	5.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.702
	SRR3591706	second leaf	33.068
	SRR3591707	mature leaf	16.972
	SRR3591708	Shoot apex	54.736
	SRR3591709	Stem	42.008
	SRR3591710	White floral bud	87.693
	SRR3591711	White flower	45.962
	SRR3591712	Green floral bud	46.806
	SRR3591713	Yellow flower	59.141
SRP173429	SRR8316895	Juvenile bud stage	19.749
	SRR8316896	Juvenile bud stage	24.105
	SRR8316897	Juvenile bud stage	12.331
	SRR8316894	Third green stage	13.228
	SRR8316900	Third green stage	32.395
	SRR8316901	Third green stage	27.125
	SRR8316898	Complete white stage	28.058
	SRR8316899	Complete white stage	43.110
	SRR8316903	Complete white stage	57.552
	SRR8316902	Silver flowering stage	31.595
	SRR8316904	Silver flowering stage	46.925
	SRR8316905	Silver flowering stage	22.058
	SRR8316906	Gold flowering stage	70.591
	SRR8316907	Gold flowering stage	82.881
	SRR8316908	Gold flowering stage	81.950
SRP132670	SRR6706286	Control	40.809
	SRR6706287	Light intensity 50%	43.435
	SRR6706288	Light intensity 20%	38.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.310
	CNS0095593	Slightly white alabastrum(diploid) 2	21.971
	CNS0095594	Slightly white alabastrum(diploid) 3	22.426
	CNS0095595	Whole white alabastrum(diploid) 2	21.063
	CNS0095596	Whole white alabastrum(diploid) 3	16.988
	CNS0095597	Whole white alabastrum(diploid) 4	21.678
	CNS0095598	Silvery flower (diploied) 1	47.278
	CNS0095599	Silvery flower (diploied) 2	32.480
	CNS0095600	Silvery flower (diploied) 3	49.505
	CNS0095601	Golden flower (diploid) 1	44.602
	CNS0095602	Golden flower (diploid) 2	38.512
	CNS0095603	Golden flower (diploid) 3	41.525
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.237
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.160
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.759
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.345
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.895
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.075
	CNS0095610	Silvery flower (tetraploid) 1	43.207
	CNS0095611	Silvery flower (tetraploid) 2	29.381
	CNS0095612	Silvery flower (tetraploid) 3	82.599
	CNS0095613	Golden flower (tetraploid) 1	36.930
	CNS0095614	Golden flower (tetraploid) 2	44.097
	CNS0095615	Golden flower (tetraploid) 3	62.267
CRA001975	CRR073297	Stem 1	32.198
	CRR073298	Stem 2	29.427
	CRR073299	Stem 3	34.599
	CRR073300	Leaf 1	33.253
	CRR073301	Leaf 2	30.238
	CRR073302	Leaf 3	26.626
	CRR073303	Juvenile bud 1	23.634
	CRR073304	Juvenile bud 2	30.267
	CRR073305	Juvenile bud 3	35.683
	CRR073306	Third green 1	44.635
	CRR073307	Third green 2	36.102
	CRR073308	Third green 3	37.986
	CRR073309	Second white 1	89.841
	CRR073310	Second white 2	99.049
	CRR073311	Second white 3	88.668
	CRR073312	Silver flowering 1	129.594
	CRR073313	Silver flowering 2	152.966
	CRR073314	Silver flowering 3	119.885
	CRR073315	Gold flowering 1	39.480
	CRR073316	Gold flowering 2	55.611
	CRR073317	Gold flowering 3	37.055
	CRR073318	Tawny withering 1	54.068
	CRR073319	Tawny withering 2	40.996
	CRR073320	Tawny withering 3	67.109