Gene detail

Detail information of GWHGAAZE030549

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007036158.1	0	Leucine-rich repeat protein kinase family protein [Theobroma cacao]
COG	YP_004775215.1	2E-12	RHS repeat-associated core domain-containing protein
Swissprot	tr\|O48788\|Y2267_ARATH	1E-106	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|A0A061G0X7\|A0A061G0X7_THECC	0	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY20659.1}
TAIR10	AT1G10850.1	8E-71	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45111376	45113601	-
GWHAAZE00000009	mRNA	45111376	45113601	-
GWHAAZE00000009	exon	45111376	45111950	-
GWHAAZE00000009	exon	45112308	45113601	-
GWHAAZE00000009	CDS	45112308	45113601	-
GWHAAZE00000009	CDS	45111376	45111950	-

Transcript Sequence
>GWHTAAZE030583 ATGTTTCCAGTCCCCTTTTGGGTAGTCTTCATTTTCTTTCTACTCTTCTCTGCTGCGAATTCAGAGAAAGAAGATGTAAAGAGGGCACTAGTTGAGTTCATGGCTAAACTATCTCCAGGAAACGGGCGAAGAGACGCAAATTTTGGTTGGAATTTGAGCTCGGATCCCTGCATAGATAAGTGGGAAGGGGTTACCTGTGATTCAACTACACAGCAATATGTTAAAAAGATTGTTCTTGACCGGAAAAATCTTACCGGATTTCTTGATGCCGGTTCTTTATGTCAAGCAAATTCCCTCCTCGTATTGAGCCTTAATAACAACAATGTGGGTGGTGGCTTACCAGCAGAGATATCAAACTGCAAATTCTTGACTCATTTGTATCTAAGTGGCAACACTTTCTCAAGAACACTCCCGGGCTCACTTTCAAGCTTAAGCAACCTCAAAAGGCTTGATTTATCCAACAATGAGTTCTCCGATGAGATTCCCAATATGTCTCGAATCTCTGGATTGCTGACTTTCCTTGCTCAAAACAATCAGCTTAGTGGAAACATATCGGAATTCAATTTCTCCAACCTTGAAGACTTCAATGTCTCCAATAACAACCTTAGCGGTCCAATTCCCGATGTTGGTGGGCGTTTTAATGCCAGCAGCTTTTTGGGTAATCTTGATTTATGCGGAAACCCGTTGTCAAACCCATGTCCGGCCTCTCCACCGGCTGGGAAGAGATCGAAACGATCCAAGAAAAATATGTATCTTATATACTCTGGTTACATTATTATCGGCCTAGTTATTTTGCTTCTCATTGCCATCAAATTGATCAAGAGAAACAAGAAGCCTAAAGAGCAAAAGAGTGATTTGAAAATGATGGGAGTTGGAGTTGGTAATATTAGTGGCAGTTCAAGTGAGTCAAAGACTAGAGGGTACAGATCGGAGTATTCAATAACATCTGGTGAAAGTGGAAGGAATTCATCATCACTCGTGGTTCTTTCGAGTAGTACACCTGTGGTGAATGGGATGAGGTTCGAGGATTTGCTTCAAGCCCCAGCAGAATTGGTTTCGAGAGGAAAACATGGAAGCCTCTACAAGGTGGAACCTGCAGGATCCCTTCCCCTTGTAGTAAAAAGGATCAAGGATCGGGGGATTTCATCGGACAGTTTTAAGAAGAGGATGCAGAGGATAAGCCAGGCAAAGCACCCAAAAGTACTACCTGTTGCTGCTTATTATTGTTCCAAGCAGGAGAAGCTCTTAGTTTATGAATTTCAGAAGAATGGCAGCCTCTTCAACCTTCTCCATGGATCACGAAATGGCCAATATTTTGACTGGGGAAGCAGACTAAGCATTGCGGCAAGTATAGCTGAGGCTTTGGTATTCATGCACGAGGAGCTTCGTGCTGATGGGATAGCACATGGTAACCTAAAATCTACCAACATTTTGCTAAACAAGGACATGGATCCGTGTATCAGTGAATATGGCCTAATGGCGGTTGAAAATCAAGACCCATCTTTTATATCCCAAACCGACAGTTCAGAAAGTAGTGAATTCAATGGTGGCCGTACATGTAACACATTCAAGGCGGACATTTATGGGTTTGGAGTGATTCTTCTCGAATTACTGACTGGGAAGATTGTACAGAATAACGGGCTTGATTTGGCCAAATGGGTACATTCGGTGGTTAAAGAAGAATGGACTGGTGAGGTGTTTGATAAATCGATCATTTTGGAAGGTGCCAATGAAGAGAGGATGGTGAACTTGTTGCAGGTAGCACTGAAGTGCATAAATCACTCGCTCAATGATAGGCCGAGCATAAATCAAGTTGCAGTTATGATCTACTCTATAAAGGAAGACGAAGAGAGATCAACAAGCTCTTGA

Network for GWHGAAZE030549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	67	3.50E-05
PF00069.26	Pkinase	354	605	3.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.226
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.102
	SRR3591708	Shoot apex	0.154
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.132
	SRR3591711	White flower	0.132
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.183
SRP173429	SRR8316895	Juvenile bud stage	0.227
	SRR8316896	Juvenile bud stage	0.101
	SRR8316897	Juvenile bud stage	0.035
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.045
	SRR8316901	Third green stage	0.052
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	0.037
	SRR8316903	Complete white stage	0.047
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.058
	SRR8316907	Gold flowering stage	0.047
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.011
	SRR6706288	Light intensity 20%	0.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.020
	CNS0095593	Slightly white alabastrum(diploid) 2	0.185
	CNS0095594	Slightly white alabastrum(diploid) 3	0.033
	CNS0095595	Whole white alabastrum(diploid) 2	0.032
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.086
	CNS0095598	Silvery flower (diploied) 1	0.037
	CNS0095599	Silvery flower (diploied) 2	0.012
	CNS0095600	Silvery flower (diploied) 3	0.051
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.004
	CNS0095603	Golden flower (diploid) 3	0.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.124
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.111
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.062
	CNS0095612	Silvery flower (tetraploid) 3	0.076
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.026
	CRR073299	Stem 3	0.084
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.010
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.167
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.316
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000