Gene detail

Detail information of GWHGAAZE030545

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007036173.1	0	Cyclic nucleotide-gated channel 16 [Theobroma cacao]
COG	YP_724331.1	2E-24	cyclic nucleotide-binding protein
Swissprot	tr\|Q9LEQ3\|CNG18_ARATH	0	Putative cyclic nucleotide-gated ion channel 18
trEMBL	tr\|A0A061G0Z0\|A0A061G0Z0_THECC	0	Cyclic nucleotide-gated channel 16 {ECO:0000313\|EMBL:EOY20674.1}
TAIR10	AT3G48010.1	0	cyclic nucleotide-gated channel 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45089165	45091802	-
GWHAAZE00000009	mRNA	45089165	45091802	-
GWHAAZE00000009	exon	45091590	45091802	-
GWHAAZE00000009	exon	45091087	45091397	-
GWHAAZE00000009	exon	45090756	45090867	-
GWHAAZE00000009	exon	45090091	45090327	-
GWHAAZE00000009	exon	45089165	45089932	-
GWHAAZE00000009	CDS	45091590	45091802	-
GWHAAZE00000009	CDS	45091087	45091397	-
GWHAAZE00000009	CDS	45090756	45090867	-
GWHAAZE00000009	CDS	45090091	45090327	-
GWHAAZE00000009	CDS	45089165	45089932	-

Transcript Sequence
>GWHTAAZE030579 ATTGTCATCTGGTATCTAATTCCAAAGAGGCAAGATGGTGCAGCTGCTTTTCATAACCATGCAATTTCTTTGGTTATTCTCCTTCAGTATATTCCCAGGGTTATTATCATTTTCCCTTTGAACCAACGAATTGTTAATACTACCGGTGCTGTAGCCAAGACTGCTTGGGCTGGGGCAGCATATAATCTTCTTCTTTACATTCTGGCTAGTCATGTTTTAGGAGCTATATGGTATTTGTTTGCTTTTGAGCGCCAGTACACGTGTTGGAAACGAGAATGTAAAAAGGAGCAGAATCTTACTGACTCTCCATCTTGTAATCAAGAATTTCTTGATTGTTCATCAATTGTTAATAAGATGAACCGGAGAGCTTGGTTGGCTGTTACTAAAGTTCTCACTAATTGTGATGCTCGAGATAATCCCCTTGACTTTGGAATGTTTGCTGATGCCTTTACCTCGAAAGTTGCTTCTGTAGACTTCACTGAAAAATATTTCTACTGCCTTTGGTTTGGTTTAAGGGGCCTGAGTTCGTATGGACAAAGTTTGGTGACAAGTACTTATATTGGCGAGACACTTTTCAGCTGTTTTGTCTGTCTTTCAGGTTTAGTTTTGTTTTCACAGCTGATCGGCAACATCCAGACGTATCTACAATCTACATCAGCAAGACTTGAAGAATGGAGGGTTAAACGAAGAGATACAGAGGAATGGATGAGGCATCGTCAACTTCCTCCTGATTTACAAGACCGAGTTCGACGGTTTGTTCAATATAAATGGCTTGCAACCAAAGGAGTAGATGAAGAAGACATTCTCCGTTCCTTACCGTTGGACCTCCGTCGTCAAATTCAAAGGCATCTTTGCCTCGCCCTTGTTCGTCGTGTCCCTTTCTTTTCACAAATGGATGATCAACTACTAGACGCAATTTGCGAGCGCCTCGTTTCATCATTGAGCACAAAAGACACGTACATTGTTCGTGAAGGTGATCCGGTGAACGAGATGCTATTTGTGATAAGAGGCGAACTCGAGAGCTCCACAACAAACGGTGGCCGGTCCGGATTTTTCAATTGCATTACTCTCAAAGCTGGTGACTTCTGCGGTGAAGAACTCCTAACGTGGGCCCTAATCCCAACCTCACCCCTCAATCTCCCATCCTCGACTCGAACGGTCAAATCACTCACGGAAGTCGAAGCCTTTGCGCTTCGAGCCAAAGACCTAAAATTCGTGGCCAAGCAGTTTAAGCGTCTCCACAGCAAGAAACTACAACACGCGTTCAGGTATTATTCGCACCAATGGAGGTCGTGGGGAGCTTGCTTTATACAAGCAGCGTGGAGACGGTACAAAAGGAAGAAATTGGCAGAGGAATTGGCGATGCAAGAGAACTTGTATTATATGCAATTACCGGATGACGATATCAACTACGAGGATGATGCTGATTGCAAGGCCAAGGAGGCCGCAAATTCGGCAATGGACACTGGTGTACAACATCTTCAAGCTACAATATTGGCTTCAAAATTTGCCGCAAATACTAGAAGAGGAGTTGTTCAAAAGGTAACGGGAGTTGAACCTGCATCGTCCAGCAGCTTAAAGATGCCCAAGTTGTTTAAGCCGAATGAGCCCGATTTCTATTCGAATCAAGAGGATGGTTGA

Network for GWHGAAZE030545

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	20	221	1.30E-15
PF00027.30	cNMP_binding	317	406	4.60E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.482
	SRR3591706	second leaf	0.232
	SRR3591707	mature leaf	0.217
	SRR3591708	Shoot apex	0.750
	SRR3591709	Stem	6.421
	SRR3591710	White floral bud	18.399
	SRR3591711	White flower	1.785
	SRR3591712	Green floral bud	17.952
	SRR3591713	Yellow flower	0.666
SRP173429	SRR8316895	Juvenile bud stage	18.103
	SRR8316896	Juvenile bud stage	11.366
	SRR8316897	Juvenile bud stage	4.125
	SRR8316894	Third green stage	1.512
	SRR8316900	Third green stage	11.173
	SRR8316901	Third green stage	7.921
	SRR8316898	Complete white stage	0.092
	SRR8316899	Complete white stage	0.584
	SRR8316903	Complete white stage	0.392
	SRR8316902	Silver flowering stage	0.382
	SRR8316904	Silver flowering stage	0.921
	SRR8316905	Silver flowering stage	0.100
	SRR8316906	Gold flowering stage	0.851
	SRR8316907	Gold flowering stage	0.510
	SRR8316908	Gold flowering stage	0.605
SRP132670	SRR6706286	Control	4.372
	SRR6706287	Light intensity 50%	5.112
	SRR6706288	Light intensity 20%	4.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.543
	CNS0095593	Slightly white alabastrum(diploid) 2	2.856
	CNS0095594	Slightly white alabastrum(diploid) 3	5.912
	CNS0095595	Whole white alabastrum(diploid) 2	17.526
	CNS0095596	Whole white alabastrum(diploid) 3	22.598
	CNS0095597	Whole white alabastrum(diploid) 4	25.507
	CNS0095598	Silvery flower (diploied) 1	0.944
	CNS0095599	Silvery flower (diploied) 2	4.715
	CNS0095600	Silvery flower (diploied) 3	2.418
	CNS0095601	Golden flower (diploid) 1	2.127
	CNS0095602	Golden flower (diploid) 2	1.638
	CNS0095603	Golden flower (diploid) 3	2.077
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.970
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.744
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.450
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.019
	CNS0095610	Silvery flower (tetraploid) 1	1.261
	CNS0095611	Silvery flower (tetraploid) 2	3.362
	CNS0095612	Silvery flower (tetraploid) 3	5.891
	CNS0095613	Golden flower (tetraploid) 1	0.961
	CNS0095614	Golden flower (tetraploid) 2	0.540
	CNS0095615	Golden flower (tetraploid) 3	4.502
CRA001975	CRR073297	Stem 1	31.721
	CRR073298	Stem 2	15.481
	CRR073299	Stem 3	15.281
	CRR073300	Leaf 1	10.852
	CRR073301	Leaf 2	6.467
	CRR073302	Leaf 3	3.535
	CRR073303	Juvenile bud 1	14.539
	CRR073304	Juvenile bud 2	10.787
	CRR073305	Juvenile bud 3	2.435
	CRR073306	Third green 1	6.233
	CRR073307	Third green 2	5.774
	CRR073308	Third green 3	6.144
	CRR073309	Second white 1	0.854
	CRR073310	Second white 2	1.493
	CRR073311	Second white 3	2.049
	CRR073312	Silver flowering 1	8.832
	CRR073313	Silver flowering 2	9.310
	CRR073314	Silver flowering 3	4.220
	CRR073315	Gold flowering 1	6.429
	CRR073316	Gold flowering 2	1.626
	CRR073317	Gold flowering 3	3.307
	CRR073318	Tawny withering 1	8.039
	CRR073319	Tawny withering 2	6.550
	CRR073320	Tawny withering 3	7.028