Gene detail

Detail information of GWHGAAZE030542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071834.1	0	PREDICTED: serine/threonine-protein kinase HT1-like [Sesamum indicum]
COG	YP_001958461.1	1E-32	hypothetical protein Aasi_1443
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1E-64	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A068UUZ9\|A0A068UUZ9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_64 {ECO:0000313\|EMBL:CDP12370.1}
TAIR10	AT5G50000.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	45033820	45037738	+
GWHAAZE00000009	mRNA	45033820	45037738	+
GWHAAZE00000009	exon	45033820	45034183	+
GWHAAZE00000009	exon	45035717	45035838	+
GWHAAZE00000009	exon	45036598	45036794	+
GWHAAZE00000009	exon	45036983	45037157	+
GWHAAZE00000009	exon	45037299	45037433	+
GWHAAZE00000009	exon	45037532	45037738	+
GWHAAZE00000009	CDS	45033820	45034183	+
GWHAAZE00000009	CDS	45035717	45035838	+
GWHAAZE00000009	CDS	45036598	45036794	+
GWHAAZE00000009	CDS	45036983	45037157	+
GWHAAZE00000009	CDS	45037299	45037433	+
GWHAAZE00000009	CDS	45037532	45037738	+

Transcript Sequence
>GWHTAAZE030576 CACAAGATCGAGAGAAAAACAGAGGAGCATAGCAGAGTGGCGAAAGAGATGAAGGAAAGCAATTCCAGTGATGGGTTTGTAAGGGCAGATCAAATTGATTTAAAGAGGTTGGATGAACAACTGGAGAGGCACCTCAGTAAATCCTGGAGTTTGGATAGGAACAGGAAGCTTCAAGGCCTTGATTCCTTCTCCGGCACCACCCCCGCTACCACCACCACCGTTACACCCACTTTTAAGTCCATCACCACTAGGCAGAGACAAGAATGGGAGATTGACCCCACCAAACTCATGATAAAGGGTGTTATTGCTCGTGGCACTTTTGGCACCGTACACCGTGGTGTTTACGACGGTCAAGATGTCGCCGTTAAGCTTCTGGACTGGGGAGAAGAGGGACACAGGACAGATGCTGAAATAGCGTCACTAAGGGCAGCTTTTACACAAGAAGTTGCGGTTTGGCATAAGCTTGAGCATCCAAATGTAACTAAGTTTATAGGTGCAACAATGGGCTCTTCAGGCCTAAAGATACAAACTGAAAATGGTCACATCGGCATGCCAAGTAATATCTGTTGTGTTGTTGTTGAATATCTTCCGGGTGGTGCCTTGAAGTCCTACCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGATTGTTGTTCAGATGGCACTTGATCTTGCAAGAGGGTTGAGTTACCTACATTCTCAAAAGATTGTACACAGAGATGTAAAGACCGAGAATATGTTATTGGACAAGAACCGTACTATAAAAATAGCTGATTTTGGGGTTGCTCGTATTGAGGCATCTAATCCAAATGACATGACCGGGGAGACTGGGACCCTCGGCTATATGGCTCCTGAGGTTCTTAACGGCAACCCATACAATAGGAAATGTGATGTGTACAGTTTCGGAATCTGTTTATGGGAGATATATTGCTGTGATATGCCTTACCCCGACCTTAGTTTTTCAGAAGTGACTTCGGCTGTGGTTCGTCAGAATTTGAGACCGGAGATACCAAGGTGTTGCCCAAGTTCTCTAGCAAATGTTATGAAAAGATGCTGGGATGCTAACCCGGACAGGCGGCCTGAGATGGATGAGGTGGTTTCTATGTTAGAAGCCATCGATACATCAAAAGGTGGAGGTATGATTCCTGGTGACCAGCCTCAAGGTTGTCTCTGCTTCCGAAAGCACCGAGGGCCTTAA

Network for GWHGAAZE030542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	98	370	1.60E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.204
	SRR3591706	second leaf	5.493
	SRR3591707	mature leaf	7.360
	SRR3591708	Shoot apex	2.338
	SRR3591709	Stem	7.163
	SRR3591710	White floral bud	13.209
	SRR3591711	White flower	8.189
	SRR3591712	Green floral bud	14.637
	SRR3591713	Yellow flower	11.742
SRP173429	SRR8316895	Juvenile bud stage	2.959
	SRR8316896	Juvenile bud stage	4.314
	SRR8316897	Juvenile bud stage	2.295
	SRR8316894	Third green stage	3.582
	SRR8316900	Third green stage	16.247
	SRR8316901	Third green stage	16.011
	SRR8316898	Complete white stage	11.299
	SRR8316899	Complete white stage	41.702
	SRR8316903	Complete white stage	15.727
	SRR8316902	Silver flowering stage	6.848
	SRR8316904	Silver flowering stage	7.504
	SRR8316905	Silver flowering stage	5.050
	SRR8316906	Gold flowering stage	19.736
	SRR8316907	Gold flowering stage	15.202
	SRR8316908	Gold flowering stage	15.078
SRP132670	SRR6706286	Control	16.202
	SRR6706287	Light intensity 50%	17.990
	SRR6706288	Light intensity 20%	17.692
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.154
	CNS0095593	Slightly white alabastrum(diploid) 2	13.680
	CNS0095594	Slightly white alabastrum(diploid) 3	10.864
	CNS0095595	Whole white alabastrum(diploid) 2	13.809
	CNS0095596	Whole white alabastrum(diploid) 3	11.712
	CNS0095597	Whole white alabastrum(diploid) 4	17.893
	CNS0095598	Silvery flower (diploied) 1	9.979
	CNS0095599	Silvery flower (diploied) 2	11.138
	CNS0095600	Silvery flower (diploied) 3	17.102
	CNS0095601	Golden flower (diploid) 1	7.728
	CNS0095602	Golden flower (diploid) 2	12.409
	CNS0095603	Golden flower (diploid) 3	10.323
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.415
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.887
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.495
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.571
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.170
	CNS0095610	Silvery flower (tetraploid) 1	8.750
	CNS0095611	Silvery flower (tetraploid) 2	7.966
	CNS0095612	Silvery flower (tetraploid) 3	23.936
	CNS0095613	Golden flower (tetraploid) 1	10.544
	CNS0095614	Golden flower (tetraploid) 2	11.936
	CNS0095615	Golden flower (tetraploid) 3	5.757
CRA001975	CRR073297	Stem 1	12.018
	CRR073298	Stem 2	13.408
	CRR073299	Stem 3	8.298
	CRR073300	Leaf 1	32.501
	CRR073301	Leaf 2	31.710
	CRR073302	Leaf 3	22.513
	CRR073303	Juvenile bud 1	39.668
	CRR073304	Juvenile bud 2	33.116
	CRR073305	Juvenile bud 3	36.800
	CRR073306	Third green 1	13.591
	CRR073307	Third green 2	11.036
	CRR073308	Third green 3	13.859
	CRR073309	Second white 1	7.854
	CRR073310	Second white 2	15.842
	CRR073311	Second white 3	10.946
	CRR073312	Silver flowering 1	7.268
	CRR073313	Silver flowering 2	6.107
	CRR073314	Silver flowering 3	6.708
	CRR073315	Gold flowering 1	10.205
	CRR073316	Gold flowering 2	13.361
	CRR073317	Gold flowering 3	6.378
	CRR073318	Tawny withering 1	8.296
	CRR073319	Tawny withering 2	15.234
	CRR073320	Tawny withering 3	6.996