Detail information of GWHGAAZE030535


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG16410.17.2949E-122dna-directed rna polymerases i, ii, and iii subunit rpabc1 [Gossypium arboreum]
COGYP_002429069.12E-16DNA-directed RNA polymerase subunit H
Swissprottr|O81098|RPB5A_ARATH3E-118DNA-directed RNA polymerases II and IV subunit 5A
trEMBLtr|F6HH08|F6HH08_VITVI8E-121Putative uncharacterized protein {ECO:0000313|EMBL:CCB51504.1}
TAIR10AT3G22320.11E-93Eukaryotic rpb5 RNA polymerase subunit family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4493101344932386-
GWHAAZE00000009mRNA4493101344932386-
GWHAAZE00000009exon4493101344931138-
GWHAAZE00000009exon4493154744931660-
GWHAAZE00000009exon4493190344932082-
GWHAAZE00000009exon4493218344932386-
GWHAAZE00000009CDS4493218344932386-
GWHAAZE00000009CDS4493190344932082-
GWHAAZE00000009CDS4493154744931660-
GWHAAZE00000009CDS4493101344931138-
Transcript Sequence

Network for GWHGAAZE030535

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03871.15RNA_pol_Rpb5_N6915.10E-30
PF01191.20RNA_pol_Rpb5_C1342062.00E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03013RPB5, POLR2E RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.097
SRR3591706second leaf2.880
SRR3591707mature leaf2.068
SRR3591708Shoot apex7.384
SRR3591709Stem2.096
SRR3591710White floral bud4.204
SRR3591711White flower4.254
SRR3591712Green floral bud2.495
SRR3591713Yellow flower2.217
SRP173429 SRR8316895Juvenile bud stage 3.471
SRR8316896Juvenile bud stage 3.153
SRR8316897Juvenile bud stage 4.309
SRR8316894Third green stage 0.303
SRR8316900Third green stage 1.098
SRR8316901Third green stage 1.365
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.127
SRR8316903Complete white stage 0.440
SRR8316902Silver flowering stage0.085
SRR8316904Silver flowering stage0.110
SRR8316905Silver flowering stage0.110
SRR8316906Gold flowering stage 0.490
SRR8316907Gold flowering stage 0.118
SRR8316908Gold flowering stage 0.596
SRP132670SRR6706286Control1.064
SRR6706287Light intensity 50%0.987
SRR6706288Light intensity 20%0.453
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.007
CNS0095593Slightly white alabastrum(diploid) 21.984
CNS0095594Slightly white alabastrum(diploid) 33.576
CNS0095595Whole white alabastrum(diploid) 22.180
CNS0095596Whole white alabastrum(diploid) 30.798
CNS0095597Whole white alabastrum(diploid) 42.612
CNS0095598Silvery flower (diploied) 13.574
CNS0095599Silvery flower (diploied) 22.234
CNS0095600Silvery flower (diploied) 31.157
CNS0095601Golden flower (diploid) 13.368
CNS0095602Golden flower (diploid) 22.485
CNS0095603Golden flower (diploid) 33.043
CNS0095604Slightly white alabastrum(tetraploid) 19.381
CNS0095605Slightly white alabastrum(tetraploid) 25.445
CNS0095606Slightly white alabastrum(tetraploid) 310.695
CNS0095607Whole white alabastrum(tetraploid) 15.151
CNS0095608Whole white alabastrum(tetraploid) 23.684
CNS0095609Whole white alabastrum(tetraploid) 36.173
CNS0095610Silvery flower (tetraploid) 15.575
CNS0095611Silvery flower (tetraploid) 27.353
CNS0095612Silvery flower (tetraploid) 33.150
CNS0095613Golden flower (tetraploid) 15.161
CNS0095614Golden flower (tetraploid) 27.208
CNS0095615Golden flower (tetraploid) 33.094
CRA001975CRR073297Stem 12.266
CRR073298Stem 20.803
CRR073299Stem 30.969
CRR073300Leaf 10.450
CRR073301Leaf 20.134
CRR073302Leaf 30.132
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.202
CRR073305Juvenile bud 30.000
CRR073306Third green 10.052
CRR073307Third green 20.156
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.160
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.148
CRR073315Gold flowering 12.152
CRR073316Gold flowering 21.125
CRR073317Gold flowering 30.798
CRR073318Tawny withering 10.305
CRR073319Tawny withering 20.703
CRR073320Tawny withering 31.486