Gene detail

Detail information of GWHGAAZE030525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663181.1	0	PREDICTED: serine/threonine-protein kinase ATM isoform X5 [Vitis vinifera]
Swissprot	tr\|Q9M3G7\|ATM_ARATH	5E-137	Serine/threonine-protein kinase ATM
trEMBL	tr\|A5BK76\|A5BK76_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN63572.1}
TAIR10	AT3G48190.1	4E-123	ataxia-telangiectasia mutated

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44814996	44820418	+
GWHAAZE00000009	mRNA	44814996	44820418	+
GWHAAZE00000009	exon	44814996	44815070	+
GWHAAZE00000009	exon	44815292	44815433	+
GWHAAZE00000009	exon	44815765	44815908	+
GWHAAZE00000009	exon	44817916	44818095	+
GWHAAZE00000009	exon	44818180	44818408	+
GWHAAZE00000009	exon	44818525	44818681	+
GWHAAZE00000009	exon	44818769	44818908	+
GWHAAZE00000009	exon	44819011	44819098	+
GWHAAZE00000009	exon	44819202	44819228	+
GWHAAZE00000009	exon	44820299	44820418	+
GWHAAZE00000009	CDS	44814996	44815070	+
GWHAAZE00000009	CDS	44815292	44815433	+
GWHAAZE00000009	CDS	44815765	44815908	+
GWHAAZE00000009	CDS	44817916	44818095	+
GWHAAZE00000009	CDS	44818180	44818408	+
GWHAAZE00000009	CDS	44818525	44818681	+
GWHAAZE00000009	CDS	44818769	44818908	+
GWHAAZE00000009	CDS	44819011	44819098	+
GWHAAZE00000009	CDS	44819202	44819228	+
GWHAAZE00000009	CDS	44820299	44820418	+

Transcript Sequence
>GWHTAAZE030559 ATGGCGTCGGTTACCTCAAGAGATGTTCAACACATCGTCTCAAAGCTCTCCTCCGATAAACCCAAATCTCGAGAAGAAGGGATTAAATTGCTGAATACCTGGCTAGAAGGTGAAAGATCGATCAGCTTCTGTAAATATATTGGAAGGAATACTGCATTGCTTAAACCCAATGAGATACCTCACGGTAAAGACATTTCTGTTTATATGATCCAGAATGCTGAAACGTGGCCTTTCCTTATTTCATTACTCATCAAATGTGTATCACTGGAGGTATCTGCAAGCAAGCGCCGATCACCAAAGTTACTTTTCGCCAAAACTCTTCGAATTGTTGTACATCGAGCAGAGGATACAAAGTTTTCGGGCAGGAATTTGCTTCTTTTATCTGTGGTTAAGGTGCTTTTCAATCACATTTGGGATGTCTTAAAGGATGACGCAAGATCTCAGGATGACCTAAGCTTTCAGTACGAGTATGGGATTATTCTCCGGCATCTTCTTGAAGTGAGACATTACCAATTTCATATGACGAAGCGGGTCTATTGTAGTTTGGTGCGTCTATACATGGGAAAGGTGGAAACAAGCTTGAGTGTGGAATGTAGTGGTCAATTGAATCCAAAAGAGGACCCTATCGAGAAAAAAAAGAATCCCAAAGAGGATGTTTTCCGCAGCATCCTGACTCTTCATTCGCTTCTTGACAATCCTCCTGGAGATTTTCCTGATGTTCTTCGGGAAGATATTGTCAATGGTTTTGTTGGGATTTTCTCTTATGTGAGGGGTGAGGGAAAGACTTTGCGCAAGTTAATTGAATGTATCAACACATACTTGGTAAAGGATGGTCCCAATTTAGGTTGTCAGTCTTTGGAAATACACGATGCTGCGCAGCAATTTGTGTTCCGCTGTTGGATAACGACCCATGATCGGGGTCTAAAGGATGCACTTGTTTTGTATGCAAGGTTACAACTGAATTTAACCAGGGGTGCTGCTGATGGGAATGCCATATTAGAACAACTTCTCGATGTAATAGGCAAGGAATTAGATCAATTCAATGTTTCCAGTGCCAATTCTACATGGAGTGACACAGCAAGGGACGATAAATGTGGAACCTTGACAAGATCACAGTGTCATTTGGTGGAGCTTGCAGCCCTTGTCTTTTGTCGGACTCTAATGTTTGGTGTTTTGGGTCAGGCATGTGTTAATACATCAAGAGCGCCATCAGCAGAAAAAAGATCCAGGAGGGAGCATGCTGCTTCCCATCTAAAAGAGCGGCTCATGAAAGGGAAATGGCTATGGCAAGTTTTGAACTGA

Network for GWHGAAZE030525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04728	ATM, TEL1	Homologous recombination	map03440
		NF-kappa B signaling pathway	map04064
		FoxO signaling pathway	map04068
		Cell cycle	map04110
		Apoptosis	map04210
		Apoptosis - fly	map04214
		p53 signaling pathway	map04115
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.240
	SRR3591706	second leaf	2.402
	SRR3591707	mature leaf	1.470
	SRR3591708	Shoot apex	1.607
	SRR3591709	Stem	1.831
	SRR3591710	White floral bud	1.295
	SRR3591711	White flower	0.617
	SRR3591712	Green floral bud	1.408
	SRR3591713	Yellow flower	0.607
SRP173429	SRR8316895	Juvenile bud stage	1.986
	SRR8316896	Juvenile bud stage	3.062
	SRR8316897	Juvenile bud stage	1.323
	SRR8316894	Third green stage	1.858
	SRR8316900	Third green stage	2.834
	SRR8316901	Third green stage	2.142
	SRR8316898	Complete white stage	0.066
	SRR8316899	Complete white stage	0.898
	SRR8316903	Complete white stage	0.398
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.255
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.170
	SRR8316907	Gold flowering stage	0.160
	SRR8316908	Gold flowering stage	0.359
SRP132670	SRR6706286	Control	2.684
	SRR6706287	Light intensity 50%	3.955
	SRR6706288	Light intensity 20%	4.302
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.385
	CNS0095593	Slightly white alabastrum(diploid) 2	0.034
	CNS0095594	Slightly white alabastrum(diploid) 3	0.059
	CNS0095595	Whole white alabastrum(diploid) 2	0.292
	CNS0095596	Whole white alabastrum(diploid) 3	0.338
	CNS0095597	Whole white alabastrum(diploid) 4	0.271
	CNS0095598	Silvery flower (diploied) 1	0.399
	CNS0095599	Silvery flower (diploied) 2	1.065
	CNS0095600	Silvery flower (diploied) 3	0.911
	CNS0095601	Golden flower (diploid) 1	0.373
	CNS0095602	Golden flower (diploid) 2	1.034
	CNS0095603	Golden flower (diploid) 3	0.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.493
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.674
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.541
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.366
	CNS0095610	Silvery flower (tetraploid) 1	0.954
	CNS0095611	Silvery flower (tetraploid) 2	1.008
	CNS0095612	Silvery flower (tetraploid) 3	0.163
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.168
	CNS0095615	Golden flower (tetraploid) 3	0.093
CRA001975	CRR073297	Stem 1	1.990
	CRR073298	Stem 2	1.840
	CRR073299	Stem 3	0.466
	CRR073300	Leaf 1	1.881
	CRR073301	Leaf 2	1.053
	CRR073302	Leaf 3	0.795
	CRR073303	Juvenile bud 1	0.676
	CRR073304	Juvenile bud 2	0.288
	CRR073305	Juvenile bud 3	0.548
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.024
	CRR073308	Third green 3	0.058
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.246
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.160
	CRR073317	Gold flowering 3	0.440
	CRR073318	Tawny withering 1	0.263
	CRR073319	Tawny withering 2	0.078
	CRR073320	Tawny withering 3	0.252