Gene detail

Detail information of GWHGAAZE030507

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008244994.1	0	PREDICTED: jmjC domain-containing protein 4 [Prunus mume]
COG	YP_001021008.1	3E-15	hypothetical protein Mpe_A1814
Swissprot	tr\|Q9M9E8\|FB92_ARATH	5E-12	F-box protein At1g78280
trEMBL	tr\|M5WWJ5\|M5WWJ5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11165.1}
TAIR10	AT5G63080.1	1E-157	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	44551620	44556475	+
GWHAAZE00000009	mRNA	44551620	44556475	+
GWHAAZE00000009	exon	44551620	44551899	+
GWHAAZE00000009	exon	44553492	44553656	+
GWHAAZE00000009	exon	44554297	44554459	+
GWHAAZE00000009	exon	44554607	44554724	+
GWHAAZE00000009	exon	44554915	44554984	+
GWHAAZE00000009	exon	44555091	44555184	+
GWHAAZE00000009	exon	44555375	44555475	+
GWHAAZE00000009	exon	44555594	44555705	+
GWHAAZE00000009	exon	44556018	44556475	+
GWHAAZE00000009	five_prime_UTR	44551620	44551686	+
GWHAAZE00000009	CDS	44551687	44551899	+
GWHAAZE00000009	CDS	44553492	44553656	+
GWHAAZE00000009	CDS	44554297	44554459	+
GWHAAZE00000009	CDS	44554607	44554724	+
GWHAAZE00000009	CDS	44554915	44554984	+
GWHAAZE00000009	CDS	44555091	44555184	+
GWHAAZE00000009	CDS	44555375	44555475	+
GWHAAZE00000009	CDS	44555594	44555705	+
GWHAAZE00000009	CDS	44556018	44556475	+

Transcript Sequence
>GWHTAAZE030541 ATATATATATCTGCTTTAACAAACCTTCTGAATAGTCAGTCCCCTTTCGCTAATAGATTTTCTGAAGATGGGTCTTAAAATCGGAGGGCAGGTAGAGAAGGTGAATGCAAAAGAACTGAAGAATTACAATGAATTCGTTGAGAGATACCTCCTCAATAACCAACCCGTACTTCTCACCGGACTCATGGATGATTGGAGGGCTTCCAAAGATTGGGTTTCCCTCGATGGACGACCTAATCTCCACTTCTTCTCCACCCATTTTGGCAATTCTAGGGTTCAGGTTGCAGAATGTGGTACTAGAGAGTTTACAGATCAGAAGAGGGTAGAAATGTCAGTGTCAGAGTTCACTGATCAGTGGCTCGAGCTATGTTCAAGAAGTGATGCTTCAACTAATGAATCCGATGGCAAGTCCCTATTGTATTTGAAGGATTGGCATTTTGTAAAGGAATATCCAGAATATCTAGCGTATACAACTCCGCTGTACTTTTGTGATGACTGGCTGAACCTATATCTCGACCAATTTCATATGCATAATGATCCTGACGCTTATCAAGAGAGGAATATAATAAGTTGCTCTGATTACCGCTTTGTTTATATTGGGGCAAAAGGTACATGGACTCCTCTTCATGCTGATGTTTTCCGGTCTTATAGTTGGTCCACCAATGTGTGTGGCAAGAAACAATGGCATTTCCTCTCTCCAAGTCAATCCCACCTAGTTTTTGACAGGAACATGAAAATTTCTGTTTATAACATCTTCGACGATGTCAGTGAAACAAAATTCCCTGGTTTTGGAAAGGCAACCTGGTTGGAATGCACTCAAGAACAAAATGAAATAATATTTGTTCCTAGTGGATGGTATCATCAAGTTCAAAATCTGGTATCCTCCTTAGTTTACAGATGTGCTAACATCATAGTGTGCTCAAAATGGTTTCAGGAAGATACAGTATCAATAAATCACAACTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGGATTTGCTTTTGCAAGATTACAATGAAGCCAAGGAGTACATTGAAGACATCAAGGACGTATGTGATGATTTTGAGGGACTCTGCCAGCGGAACCTTGCAGCTAACACAGGCATGAATTTCAATGATTTCTTCATCTTTGTAGCACGTTTTTCCTTTGCCAACTTGGTCCAACTGTACCTTCTTGCTAGCACTGACACACGTGCCATTCAGAATTCATCCCAAAGGTCTCGGCATATACTTTTCAACCTTGAATCTGCACGGAATATTGCGTTGAAGATGCAATCTACAAGTTTGGCTGAAAACCATGGCATTTCCATTGATTTTCAGAAAACTTTGGAAGATCCTGCATTTTTGAAACTCTGCATGGATTTGGGAAGAACATATGCATTGATACATGAGCAATGTGAACAAGATTCTGATAGTAAGCAAGCATTAGTGGATCATATGGTGGACTTTGATTTCCTAAATTTGAGCATTTCTGTTGTTCGTAATCCTGAAGATCTAGTAAGCTTCATAGACTGCGTGTGTACAAAATTCAGTGGCAATTACACCAGCAGCGAGTTATGA

Network for GWHGAAZE030507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13621.7	Cupin_8	21	289	2.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.686
	SRR3591706	second leaf	12.900
	SRR3591707	mature leaf	13.905
	SRR3591708	Shoot apex	19.003
	SRR3591709	Stem	13.990
	SRR3591710	White floral bud	22.940
	SRR3591711	White flower	21.175
	SRR3591712	Green floral bud	10.762
	SRR3591713	Yellow flower	17.477
SRP173429	SRR8316895	Juvenile bud stage	6.938
	SRR8316896	Juvenile bud stage	8.906
	SRR8316897	Juvenile bud stage	3.833
	SRR8316894	Third green stage	4.281
	SRR8316900	Third green stage	8.302
	SRR8316901	Third green stage	8.329
	SRR8316898	Complete white stage	5.436
	SRR8316899	Complete white stage	17.711
	SRR8316903	Complete white stage	9.477
	SRR8316902	Silver flowering stage	4.770
	SRR8316904	Silver flowering stage	6.876
	SRR8316905	Silver flowering stage	3.277
	SRR8316906	Gold flowering stage	9.569
	SRR8316907	Gold flowering stage	10.121
	SRR8316908	Gold flowering stage	13.689
SRP132670	SRR6706286	Control	4.310
	SRR6706287	Light intensity 50%	4.613
	SRR6706288	Light intensity 20%	4.759
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.121
	CNS0095593	Slightly white alabastrum(diploid) 2	5.558
	CNS0095594	Slightly white alabastrum(diploid) 3	6.447
	CNS0095595	Whole white alabastrum(diploid) 2	6.745
	CNS0095596	Whole white alabastrum(diploid) 3	3.980
	CNS0095597	Whole white alabastrum(diploid) 4	4.875
	CNS0095598	Silvery flower (diploied) 1	11.835
	CNS0095599	Silvery flower (diploied) 2	9.108
	CNS0095600	Silvery flower (diploied) 3	9.183
	CNS0095601	Golden flower (diploid) 1	11.165
	CNS0095602	Golden flower (diploid) 2	10.953
	CNS0095603	Golden flower (diploid) 3	9.507
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.920
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.960
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.527
	CNS0095610	Silvery flower (tetraploid) 1	10.247
	CNS0095611	Silvery flower (tetraploid) 2	9.584
	CNS0095612	Silvery flower (tetraploid) 3	10.448
	CNS0095613	Golden flower (tetraploid) 1	6.592
	CNS0095614	Golden flower (tetraploid) 2	8.784
	CNS0095615	Golden flower (tetraploid) 3	8.924
CRA001975	CRR073297	Stem 1	6.629
	CRR073298	Stem 2	6.397
	CRR073299	Stem 3	2.997
	CRR073300	Leaf 1	4.598
	CRR073301	Leaf 2	4.938
	CRR073302	Leaf 3	3.600
	CRR073303	Juvenile bud 1	1.769
	CRR073304	Juvenile bud 2	2.966
	CRR073305	Juvenile bud 3	3.563
	CRR073306	Third green 1	2.238
	CRR073307	Third green 2	1.071
	CRR073308	Third green 3	1.307
	CRR073309	Second white 1	1.410
	CRR073310	Second white 2	1.952
	CRR073311	Second white 3	2.183
	CRR073312	Silver flowering 1	1.946
	CRR073313	Silver flowering 2	2.941
	CRR073314	Silver flowering 3	1.859
	CRR073315	Gold flowering 1	2.833
	CRR073316	Gold flowering 2	3.861
	CRR073317	Gold flowering 3	0.876
	CRR073318	Tawny withering 1	4.148
	CRR073319	Tawny withering 2	6.269
	CRR073320	Tawny withering 3	3.057