Detail information of GWHGAAZE030506


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP31060.10hypothetical protein JCGZ_11436 [Jatropha curcas]
COGYP_004576282.10AAA family ATPase
Swissprottr|P54774|CDC48_SOYBN0Cell division cycle protein 48 homolog
trEMBLtr|A0A067KFM2|A0A067KFM2_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP31060.1}
TAIR10AT5G03340.10ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4453489144537984-
GWHAAZE00000009mRNA4453489144537984-
GWHAAZE00000009exon4453489144535085-
GWHAAZE00000009exon4453518544535544-
GWHAAZE00000009exon4453564644535927-
GWHAAZE00000009exon4453610344536174-
GWHAAZE00000009exon4453635644536577-
GWHAAZE00000009exon4453667744537408-
GWHAAZE00000009exon4453765844537780-
GWHAAZE00000009exon4453786544537984-
GWHAAZE00000009CDS4453786544537984-
GWHAAZE00000009CDS4453765844537780-
GWHAAZE00000009CDS4453667744537408-
GWHAAZE00000009CDS4453635644536577-
GWHAAZE00000009CDS4453610344536174-
GWHAAZE00000009CDS4453564644535927-
GWHAAZE00000009CDS4453518544535544-
GWHAAZE00000009CDS4453489144535085-
Transcript Sequence

Network for GWHGAAZE030506

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02359.19CDC48_N6781.20E-15
PF02933.18CDC48_2791201.00E-05
PF00004.30AAA1733021.00E-45
PF17862.2AAA_lid_33253681.10E-13
PF00004.30AAA4465782.90E-46
PF17862.2AAA_lid_36026457.20E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13525VCP, CDC48 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.576
SRR3591706second leaf1.149
SRR3591707mature leaf0.056
SRR3591708Shoot apex1.473
SRR3591709Stem0.363
SRR3591710White floral bud0.100
SRR3591711White flower0.047
SRR3591712Green floral bud0.383
SRR3591713Yellow flower1.185
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.058
SRR8316897Juvenile bud stage 0.019
SRR8316894Third green stage 0.059
SRR8316900Third green stage 0.968
SRR8316901Third green stage 0.082
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.045
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.017
SRR8316906Gold flowering stage 0.166
SRR8316907Gold flowering stage 0.067
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.871
SRR6706287Light intensity 50%0.736
SRR6706288Light intensity 20%0.827
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.274
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.424
CNS0095596Whole white alabastrum(diploid) 30.394
CNS0095597Whole white alabastrum(diploid) 41.954
CNS0095598Silvery flower (diploied) 10.072
CNS0095599Silvery flower (diploied) 20.099
CNS0095600Silvery flower (diploied) 30.055
CNS0095601Golden flower (diploid) 10.242
CNS0095602Golden flower (diploid) 20.096
CNS0095603Golden flower (diploid) 30.256
CNS0095604Slightly white alabastrum(tetraploid) 10.365
CNS0095605Slightly white alabastrum(tetraploid) 20.351
CNS0095606Slightly white alabastrum(tetraploid) 30.172
CNS0095607Whole white alabastrum(tetraploid) 12.070
CNS0095608Whole white alabastrum(tetraploid) 24.147
CNS0095609Whole white alabastrum(tetraploid) 30.961
CNS0095610Silvery flower (tetraploid) 10.040
CNS0095611Silvery flower (tetraploid) 20.042
CNS0095612Silvery flower (tetraploid) 30.236
CNS0095613Golden flower (tetraploid) 10.438
CNS0095614Golden flower (tetraploid) 20.285
CNS0095615Golden flower (tetraploid) 30.124
CRA001975CRR073297Stem 10.092
CRR073298Stem 20.104
CRR073299Stem 30.105
CRR073300Leaf 10.242
CRR073301Leaf 20.104
CRR073302Leaf 30.099
CRR073303Juvenile bud 10.858
CRR073304Juvenile bud 21.494
CRR073305Juvenile bud 30.022
CRR073306Third green 10.345
CRR073307Third green 20.488
CRR073308Third green 30.369
CRR073309Second white 10.000
CRR073310Second white 20.043
CRR073311Second white 30.025
CRR073312Silver flowering 10.073
CRR073313Silver flowering 20.285
CRR073314Silver flowering 30.028
CRR073315Gold flowering 10.207
CRR073316Gold flowering 20.025
CRR073317Gold flowering 30.073
CRR073318Tawny withering 10.507
CRR073319Tawny withering 20.541
CRR073320Tawny withering 30.519